These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
383 related articles for article (PubMed ID: 21337703)
1. SearchGUI: An open-source graphical user interface for simultaneous OMSSA and X!Tandem searches. Vaudel M; Barsnes H; Berven FS; Sickmann A; Martens L Proteomics; 2011 Mar; 11(5):996-9. PubMed ID: 21337703 [TBL] [Abstract][Full Text] [Related]
2. OMSSA Parser: an open-source library to parse and extract data from OMSSA MS/MS search results. Barsnes H; Huber S; Sickmann A; Eidhammer I; Martens L Proteomics; 2009 Jul; 9(14):3772-4. PubMed ID: 19639591 [TBL] [Abstract][Full Text] [Related]
3. XTandem Parser: an open-source library to parse and analyse X!Tandem MS/MS search results. Muth T; Vaudel M; Barsnes H; Martens L; Sickmann A Proteomics; 2010 Apr; 10(7):1522-4. PubMed ID: 20140905 [TBL] [Abstract][Full Text] [Related]
4. DeNovoGUI: an open source graphical user interface for de novo sequencing of tandem mass spectra. Muth T; Weilnböck L; Rapp E; Huber CG; Martens L; Vaudel M; Barsnes H J Proteome Res; 2014 Feb; 13(2):1143-6. PubMed ID: 24295440 [TBL] [Abstract][Full Text] [Related]
5. A collection of open source applications for mass spectrometry data mining. Gallardo Ó; Ovelleiro D; Gay M; Carrascal M; Abian J Proteomics; 2014 Oct; 14(20):2275-9. PubMed ID: 25055762 [TBL] [Abstract][Full Text] [Related]
7. Parallel tandem: a program for parallel processing of tandem mass spectra using PVM or MPI and X!Tandem. Duncan DT; Craig R; Link AJ J Proteome Res; 2005; 4(5):1842-7. PubMed ID: 16212440 [TBL] [Abstract][Full Text] [Related]
8. IPeak: An open source tool to combine results from multiple MS/MS search engines. Wen B; Du C; Li G; Ghali F; Jones AR; Käll L; Xu S; Zhou R; Ren Z; Feng Q; Xu X; Wang J Proteomics; 2015 Sep; 15(17):2916-20. PubMed ID: 25951428 [TBL] [Abstract][Full Text] [Related]
9. OMSSAGUI: An open-source user interface component to configure and run the OMSSA search engine. Tharakan R; Martens L; Van Eyk JE; Graham DR Proteomics; 2008 Jun; 8(12):2376-8. PubMed ID: 18563730 [TBL] [Abstract][Full Text] [Related]
10. OVNIp: an open source application facilitating the interpretation, the validation and the edition of proteomics data generated by MS analyses and de novo sequencing. Tessier D; Yclon P; Jacquemin I; Larré C; Rogniaux H Proteomics; 2010 May; 10(9):1794-801. PubMed ID: 20198638 [TBL] [Abstract][Full Text] [Related]
11. Proteomic Cinderella: Customized analysis of bulky MS/MS data in one night. Kiseleva O; Poverennaya E; Shargunov A; Lisitsa A J Bioinform Comput Biol; 2018 Feb; 16(1):1740011. PubMed ID: 29216772 [TBL] [Abstract][Full Text] [Related]
12. TOPPView: an open-source viewer for mass spectrometry data. Sturm M; Kohlbacher O J Proteome Res; 2009 Jul; 8(7):3760-3. PubMed ID: 19425593 [TBL] [Abstract][Full Text] [Related]
13. MSQuant, an open source platform for mass spectrometry-based quantitative proteomics. Mortensen P; Gouw JW; Olsen JV; Ong SE; Rigbolt KT; Bunkenborg J; Cox J; Foster LJ; Heck AJ; Blagoev B; Andersen JS; Mann M J Proteome Res; 2010 Jan; 9(1):393-403. PubMed ID: 19888749 [TBL] [Abstract][Full Text] [Related]
14. Compid: a new software tool to integrate and compare MS/MS based protein identification results from Mascot and Paragon. Lietzén N; Natri L; Nevalainen OS; Salmi J; Nyman TA J Proteome Res; 2010 Dec; 9(12):6795-800. PubMed ID: 20973569 [TBL] [Abstract][Full Text] [Related]
15. SearchGUI: A Highly Adaptable Common Interface for Proteomics Search and de Novo Engines. Barsnes H; Vaudel M J Proteome Res; 2018 Jul; 17(7):2552-2555. PubMed ID: 29774740 [TBL] [Abstract][Full Text] [Related]
16. Submitting proteomics data to PRIDE using PRIDE Converter. Barsnes H; Vizcaíno JA; Reisinger F; Eidhammer I; Martens L Methods Mol Biol; 2011; 694():237-53. PubMed ID: 21082439 [TBL] [Abstract][Full Text] [Related]
18. VEMS 3.0: algorithms and computational tools for tandem mass spectrometry based identification of post-translational modifications in proteins. Matthiesen R; Trelle MB; Højrup P; Bunkenborg J; Jensen ON J Proteome Res; 2005; 4(6):2338-47. PubMed ID: 16335983 [TBL] [Abstract][Full Text] [Related]
19. Fast tandem mass spectra-based protein identification regardless of the number of spectra or potential modifications examined. Falkner J; Andrews P Bioinformatics; 2005 May; 21(10):2177-84. PubMed ID: 15746284 [TBL] [Abstract][Full Text] [Related]
20. Tandem Mass Spectrum Sequencing: An Alternative to Database Search Engines in Shotgun Proteomics. Muth T; Rapp E; Berven FS; Barsnes H; Vaudel M Adv Exp Med Biol; 2016; 919():217-226. PubMed ID: 27975219 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]