BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

114 related articles for article (PubMed ID: 21342585)

  • 1. Repeat-aware modeling and correction of short read errors.
    Yang X; Aluru S; Dorman KS
    BMC Bioinformatics; 2011 Feb; 12 Suppl 1(Suppl 1):S52. PubMed ID: 21342585
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A hybrid and scalable error correction algorithm for indel and substitution errors of long reads.
    Das AK; Goswami S; Lee K; Park SJ
    BMC Genomics; 2019 Dec; 20(Suppl 11):948. PubMed ID: 31856721
    [TBL] [Abstract][Full Text] [Related]  

  • 3. NextPolish2: A Repeat-aware Polishing Tool for Genomes Assembled Using HiFi Long Reads.
    Hu J; Wang Z; Liang F; Liu SL; Ye K; Wang DP
    Genomics Proteomics Bioinformatics; 2024 May; 22(1):. PubMed ID: 38862426
    [TBL] [Abstract][Full Text] [Related]  

  • 4. NanoSim: nanopore sequence read simulator based on statistical characterization.
    Yang C; Chu J; Warren RL; Birol I
    Gigascience; 2017 Apr; 6(4):1-6. PubMed ID: 28327957
    [TBL] [Abstract][Full Text] [Related]  

  • 5. ECHO: a reference-free short-read error correction algorithm.
    Kao WC; Chan AH; Song YS
    Genome Res; 2011 Jul; 21(7):1181-92. PubMed ID: 21482625
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Pluribus-Exploring the Limits of Error Correction Using a Suffix Tree.
    Savel D; LaFramboise T; Grama A; Koyuturk M
    IEEE/ACM Trans Comput Biol Bioinform; 2017; 14(6):1378-1388. PubMed ID: 27362987
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Analyses of Nuclear Reads Obtained Using Genome Skimming.
    Mirarab S; Bafna V
    Methods Mol Biol; 2024; 2744():247-265. PubMed ID: 38683324
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Denoising DNA deep sequencing data-high-throughput sequencing errors and their correction.
    Laehnemann D; Borkhardt A; McHardy AC
    Brief Bioinform; 2016 Jan; 17(1):154-79. PubMed ID: 26026159
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Inference of Markovian properties of molecular sequences from NGS data and applications to comparative genomics.
    Ren J; Song K; Deng M; Reinert G; Cannon CH; Sun F
    Bioinformatics; 2016 Apr; 32(7):993-1000. PubMed ID: 26130573
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Quake: quality-aware detection and correction of sequencing errors.
    Kelley DR; Schatz MC; Salzberg SL
    Genome Biol; 2010; 11(11):R116. PubMed ID: 21114842
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Targeted Long-Read Sequencing of a Locus Under Long-Term Balancing Selection in
    Bachmann JA; Tedder A; Laenen B; Steige KA; Slotte T
    G3 (Bethesda); 2018 Mar; 8(4):1327-1333. PubMed ID: 29476024
    [TBL] [Abstract][Full Text] [Related]  

  • 12. SAKE: Strobemer-assisted k-mer extraction.
    Leinonen M; Salmela L
    PLoS One; 2023; 18(11):e0294415. PubMed ID: 38019768
    [TBL] [Abstract][Full Text] [Related]  

  • 13. NmTHC: a hybrid error correction method based on a generative neural machine translation model with transfer learning.
    Wang R; Chen J
    BMC Genomics; 2024 Jun; 25(1):573. PubMed ID: 38849740
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Integration of hybrid and self-correction method improves the quality of long-read sequencing data.
    Tang T; Liu Y; Zheng B; Li R; Zhang X; Liu Y
    Brief Funct Genomics; 2024 May; 23(3):249-255. PubMed ID: 37340778
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Can long-read sequencing tackle the barriers, which the next-generation could not? A review.
    Szakállas N; Barták BK; Valcz G; Nagy ZB; Takács I; Molnár B
    Pathol Oncol Res; 2024; 30():1611676. PubMed ID: 38818014
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Next-generation sequencing and large genome assemblies.
    Henson J; Tischler G; Ning Z
    Pharmacogenomics; 2012 Jun; 13(8):901-15. PubMed ID: 22676195
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Levenshtein error-correcting barcodes for multiplexed DNA sequencing.
    Buschmann T; Bystrykh LV
    BMC Bioinformatics; 2013 Sep; 14():272. PubMed ID: 24021088
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Sequencing error correction without a reference genome.
    Sleep JA; Schreiber AW; Baumann U
    BMC Bioinformatics; 2013 Dec; 14():367. PubMed ID: 24350580
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Benchmarking of computational error-correction methods for next-generation sequencing data.
    Mitchell K; Brito JJ; Mandric I; Wu Q; Knyazev S; Chang S; Martin LS; Karlsberg A; Gerasimov E; Littman R; Hill BL; Wu NC; Yang HT; Hsieh K; Chen L; Littman E; Shabani T; Enik G; Yao D; Sun R; Schroeder J; Eskin E; Zelikovsky A; Skums P; Pop M; Mangul S
    Genome Biol; 2020 Mar; 21(1):71. PubMed ID: 32183840
    [TBL] [Abstract][Full Text] [Related]  

  • 20. A randomized approach to speed up the analysis of large-scale read-count data in the application of CNV detection.
    Wang W; Sun W; Wang W; Szatkiewicz J
    BMC Bioinformatics; 2018 Mar; 19(1):74. PubMed ID: 29490610
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.