298 related articles for article (PubMed ID: 21342585)
41. Socrates: identification of genomic rearrangements in tumour genomes by re-aligning soft clipped reads.
Schröder J; Hsu A; Boyle SE; Macintyre G; Cmero M; Tothill RW; Johnstone RW; Shackleton M; Papenfuss AT
Bioinformatics; 2014 Apr; 30(8):1064-1072. PubMed ID: 24389656
[TBL] [Abstract][Full Text] [Related]
42. Tandem-genotypes: robust detection of tandem repeat expansions from long DNA reads.
Mitsuhashi S; Frith MC; Mizuguchi T; Miyatake S; Toyota T; Adachi H; Oma Y; Kino Y; Mitsuhashi H; Matsumoto N
Genome Biol; 2019 Mar; 20(1):58. PubMed ID: 30890163
[TBL] [Abstract][Full Text] [Related]
43. Improving read mapping using additional prefix grams.
Kim J; Li C; Xie X
BMC Bioinformatics; 2014 Feb; 15():42. PubMed ID: 24499321
[TBL] [Abstract][Full Text] [Related]
44. Accurate self-correction of errors in long reads using de Bruijn graphs.
Salmela L; Walve R; Rivals E; Ukkonen E
Bioinformatics; 2017 Mar; 33(6):799-806. PubMed ID: 27273673
[TBL] [Abstract][Full Text] [Related]
45. Optimal compressed representation of high throughput sequence data via light assembly.
Ginart AA; Hui J; Zhu K; Numanagić I; Courtade TA; Sahinalp SC; Tse DN
Nat Commun; 2018 Feb; 9(1):566. PubMed ID: 29422526
[TBL] [Abstract][Full Text] [Related]
46. PARRoT- a homology-based strategy to quantify and compare RNA-sequencing from non-model organisms.
Gan RC; Chen TW; Wu TH; Huang PJ; Lee CC; Yeh YM; Chiu CH; Huang HD; Tang P
BMC Bioinformatics; 2016 Dec; 17(Suppl 19):513. PubMed ID: 28155708
[TBL] [Abstract][Full Text] [Related]
47. Pluribus-Exploring the Limits of Error Correction Using a Suffix Tree.
Savel D; LaFramboise T; Grama A; Koyuturk M
IEEE/ACM Trans Comput Biol Bioinform; 2017; 14(6):1378-1388. PubMed ID: 27362987
[TBL] [Abstract][Full Text] [Related]
48. Inference of Markovian properties of molecular sequences from NGS data and applications to comparative genomics.
Ren J; Song K; Deng M; Reinert G; Cannon CH; Sun F
Bioinformatics; 2016 Apr; 32(7):993-1000. PubMed ID: 26130573
[TBL] [Abstract][Full Text] [Related]
49. Hybrid correction of highly noisy long reads using a variable-order de Bruijn graph.
Morisse P; Lecroq T; Lefebvre A
Bioinformatics; 2018 Dec; 34(24):4213-4222. PubMed ID: 29955770
[TBL] [Abstract][Full Text] [Related]
50. Evaluation and Validation of Assembling Corrected PacBio Long Reads for Microbial Genome Completion via Hybrid Approaches.
Lin HH; Liao YC
PLoS One; 2015; 10(12):e0144305. PubMed ID: 26641475
[TBL] [Abstract][Full Text] [Related]
51. Iterative error correction of long sequencing reads maximizes accuracy and improves contig assembly.
Sameith K; Roscito JG; Hiller M
Brief Bioinform; 2017 Jan; 18(1):1-8. PubMed ID: 26868358
[TBL] [Abstract][Full Text] [Related]
52. lordFAST: sensitive and Fast Alignment Search Tool for LOng noisy Read sequencing Data.
Haghshenas E; Sahinalp SC; Hach F
Bioinformatics; 2019 Jan; 35(1):20-27. PubMed ID: 30561550
[TBL] [Abstract][Full Text] [Related]
53. A benchmark and an algorithm for detecting germline transposon insertions and measuring de novo transposon insertion frequencies.
Yu T; Huang X; Dou S; Tang X; Luo S; Theurkauf WE; Lu J; Weng Z
Nucleic Acids Res; 2021 May; 49(8):e44. PubMed ID: 33511407
[TBL] [Abstract][Full Text] [Related]
54. RACER: Rapid and accurate correction of errors in reads.
Ilie L; Molnar M
Bioinformatics; 2013 Oct; 29(19):2490-3. PubMed ID: 23853064
[TBL] [Abstract][Full Text] [Related]
55. When less is more: 'slicing' sequencing data improves read decoding accuracy and de novo assembly quality.
Lonardi S; Mirebrahim H; Wanamaker S; Alpert M; Ciardo G; Duma D; Close TJ
Bioinformatics; 2015 Sep; 31(18):2972-80. PubMed ID: 25995232
[TBL] [Abstract][Full Text] [Related]
56. SHREC: a short-read error correction method.
Schröder J; Schröder H; Puglisi SJ; Sinha R; Schmidt B
Bioinformatics; 2009 Sep; 25(17):2157-63. PubMed ID: 19542152
[TBL] [Abstract][Full Text] [Related]
57. Aberration-corrected ultrafine analysis of miRNA reads at single-base resolution: a k-mer lattice approach.
Zhang X; Ping P; Hutvagner G; Blumenstein M; Li J
Nucleic Acids Res; 2021 Oct; 49(18):e106. PubMed ID: 34291293
[TBL] [Abstract][Full Text] [Related]
58. Statistical modeling for sensitive detection of low-frequency single nucleotide variants.
Hao Y; Zhang P; Xuei X; Nakshatri H; Edenberg HJ; Li L; Liu Y
BMC Genomics; 2016 Aug; 17 Suppl 7(Suppl 7):514. PubMed ID: 27556804
[TBL] [Abstract][Full Text] [Related]
59. Comparative analysis of algorithms for next-generation sequencing read alignment.
Ruffalo M; LaFramboise T; Koyutürk M
Bioinformatics; 2011 Oct; 27(20):2790-6. PubMed ID: 21856737
[TBL] [Abstract][Full Text] [Related]
60. Mapsembler, targeted and micro assembly of large NGS datasets on a desktop computer.
Peterlongo P; Chikhi R
BMC Bioinformatics; 2012 Mar; 13():48. PubMed ID: 22443449
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
