These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

257 related articles for article (PubMed ID: 21348498)

  • 1. Metal binding motif in the active site of the HDV ribozyme binds divalent and monovalent ions.
    Veeraraghavan N; Ganguly A; Chen JH; Bevilacqua PC; Hammes-Schiffer S; Golden BL
    Biochemistry; 2011 Apr; 50(13):2672-82. PubMed ID: 21348498
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Mechanistic strategies in the HDV ribozyme: chelated and diffuse metal ion interactions and active site protonation.
    Veeraraghavan N; Ganguly A; Golden BL; Bevilacqua PC; Hammes-Schiffer S
    J Phys Chem B; 2011 Jun; 115(25):8346-57. PubMed ID: 21644800
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Identification of the catalytic Mg²⁺ ion in the hepatitis delta virus ribozyme.
    Chen J; Ganguly A; Miswan Z; Hammes-Schiffer S; Bevilacqua PC; Golden BL
    Biochemistry; 2013 Jan; 52(3):557-67. PubMed ID: 23311293
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Wobble pairs of the HDV ribozyme play specific roles in stabilization of active site dynamics.
    Sripathi KN; Banáš P; Réblová K; Šponer J; Otyepka M; Walter NG
    Phys Chem Chem Phys; 2015 Feb; 17(8):5887-900. PubMed ID: 25631765
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Mechanistic characterization of the HDV genomic ribozyme: assessing the catalytic and structural contributions of divalent metal ions within a multichannel reaction mechanism.
    Nakano S; Proctor DJ; Bevilacqua PC
    Biochemistry; 2001 Oct; 40(40):12022-38. PubMed ID: 11580278
    [TBL] [Abstract][Full Text] [Related]  

  • 6. A 1.9 A crystal structure of the HDV ribozyme precleavage suggests both Lewis acid and general acid mechanisms contribute to phosphodiester cleavage.
    Chen JH; Yajima R; Chadalavada DM; Chase E; Bevilacqua PC; Golden BL
    Biochemistry; 2010 Aug; 49(31):6508-18. PubMed ID: 20677830
    [TBL] [Abstract][Full Text] [Related]  

  • 7. A catalytic metal ion interacts with the cleavage Site G.U wobble in the HDV ribozyme.
    Chen JH; Gong B; Bevilacqua PC; Carey PR; Golden BL
    Biochemistry; 2009 Feb; 48(7):1498-507. PubMed ID: 19178151
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Structural dynamics of precursor and product of the RNA enzyme from the hepatitis delta virus as revealed by molecular dynamics simulations.
    Krasovska MV; Sefcikova J; Spacková N; Sponer J; Walter NG
    J Mol Biol; 2005 Aug; 351(4):731-48. PubMed ID: 16045932
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Magnesium dependence of the amplified conformational switch in the trans-acting hepatitis delta virus ribozyme.
    Tinsley RA; Harris DA; Walter NG
    Biochemistry; 2004 Jul; 43(28):8935-45. PubMed ID: 15248751
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Two distinct catalytic strategies in the hepatitis δ virus ribozyme cleavage reaction.
    Golden BL
    Biochemistry; 2011 Nov; 50(44):9424-33. PubMed ID: 22003985
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Competition between Co(NH(3)(6)3+ and inner sphere Mg2+ ions in the HDV ribozyme.
    Gong B; Chen JH; Bevilacqua PC; Golden BL; Carey PR
    Biochemistry; 2009 Dec; 48(50):11961-70. PubMed ID: 19888753
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Mechanistic characterization of the HDV genomic ribozyme: the cleavage site base pair plays a structural role in facilitating catalysis.
    Cerrone-Szakal AL; Chadalavada DM; Golden BL; Bevilacqua PC
    RNA; 2008 Sep; 14(9):1746-60. PubMed ID: 18658121
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Disparate HDV ribozyme crystal structures represent intermediates on a rugged free-energy landscape.
    Sripathi KN; Tay WW; Banáš P; Otyepka M; Šponer J; Walter NG
    RNA; 2014 Jul; 20(7):1112-28. PubMed ID: 24854621
    [TBL] [Abstract][Full Text] [Related]  

  • 14. The genomic HDV ribozyme utilizes a previously unnoticed U-turn motif to accomplish fast site-specific catalysis.
    Sefcikova J; Krasovska MV; Sponer J; Walter NG
    Nucleic Acids Res; 2007; 35(6):1933-46. PubMed ID: 17337436
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Terbium-mediated footprinting probes a catalytic conformational switch in the antigenomic hepatitis delta virus ribozyme.
    Harris DA; Tinsley RA; Walter NG
    J Mol Biol; 2004 Aug; 341(2):389-403. PubMed ID: 15276831
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Structural roles of monovalent cations in the HDV ribozyme.
    Ke A; Ding F; Batchelor JD; Doudna JA
    Structure; 2007 Mar; 15(3):281-7. PubMed ID: 17355864
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Thio effects and an unconventional metal ion rescue in the genomic hepatitis delta virus ribozyme.
    Thaplyal P; Ganguly A; Golden BL; Hammes-Schiffer S; Bevilacqua PC
    Biochemistry; 2013 Sep; 52(37):6499-514. PubMed ID: 24001219
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Cleavage reaction of HDV ribozymes in the presence of Mg2+ is accompanied by a conformational change.
    Tanaka Y; Tagaya M; Hori T; Sakamoto T; Kurihara Y; Katahira M; Uesugi S
    Genes Cells; 2002 Jun; 7(6):567-79. PubMed ID: 12059960
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Long-distance communication in the HDV ribozyme: insights from molecular dynamics and experiments.
    Veeraraghavan N; Bevilacqua PC; Hammes-Schiffer S
    J Mol Biol; 2010 Sep; 402(1):278-91. PubMed ID: 20643139
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Two Divalent Metal Ions and Conformational Changes Play Roles in the Hammerhead Ribozyme Cleavage Reaction.
    Mir A; Chen J; Robinson K; Lendy E; Goodman J; Neau D; Golden BL
    Biochemistry; 2015 Oct; 54(41):6369-81. PubMed ID: 26398724
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 13.