255 related articles for article (PubMed ID: 21352066)
1. Phylogeny inference based on spectral graph clustering.
Zhang SB; Zhou SY; He JG; Lai JH
J Comput Biol; 2011 Apr; 18(4):627-37. PubMed ID: 21352066
[TBL] [Abstract][Full Text] [Related]
2. FastJoin, an improved neighbor-joining algorithm.
Wang J; Guo MZ; Xing LL
Genet Mol Res; 2012 Jul; 11(3):1909-22. PubMed ID: 22869546
[TBL] [Abstract][Full Text] [Related]
3. Accuracy guarantees for phylogeny reconstruction algorithms based on balanced minimum evolution.
Bordewich M; Mihaescu R
IEEE/ACM Trans Comput Biol Bioinform; 2013; 10(3):576-83. PubMed ID: 24091392
[TBL] [Abstract][Full Text] [Related]
4. Efficiencies of fast algorithms of phylogenetic inference under the criteria of maximum parsimony, minimum evolution, and maximum likelihood when a large number of sequences are used.
Takahashi K; Nei M
Mol Biol Evol; 2000 Aug; 17(8):1251-8. PubMed ID: 10908645
[TBL] [Abstract][Full Text] [Related]
5. A new efficient algorithm for inferring explicit hybridization networks following the Neighbor-Joining principle.
Willems M; Tahiri N; Makarenkov V
J Bioinform Comput Biol; 2014 Oct; 12(5):1450024. PubMed ID: 25219384
[TBL] [Abstract][Full Text] [Related]
6. Genetic algorithm for large-scale maximum parsimony phylogenetic analysis of proteins.
Hill T; Lundgren A; Fredriksson R; Schiöth HB
Biochim Biophys Acta; 2005 Aug; 1725(1):19-29. PubMed ID: 15990235
[TBL] [Abstract][Full Text] [Related]
7. Correcting for sequencing error in maximum likelihood phylogeny inference.
Kuhner MK; McGill J
G3 (Bethesda); 2014 Nov; 4(12):2545-52. PubMed ID: 25378476
[TBL] [Abstract][Full Text] [Related]
8. Clearcut: a fast implementation of relaxed neighbor joining.
Sheneman L; Evans J; Foster JA
Bioinformatics; 2006 Nov; 22(22):2823-4. PubMed ID: 16982706
[TBL] [Abstract][Full Text] [Related]
9. A genetic algorithm for maximum-likelihood phylogeny inference using nucleotide sequence data.
Lewis PO
Mol Biol Evol; 1998 Mar; 15(3):277-83. PubMed ID: 9501494
[TBL] [Abstract][Full Text] [Related]
10. ML or NJ-MCL? A comparison between two robust phylogenetic methods.
Som A
Comput Biol Chem; 2009 Oct; 33(5):373-8. PubMed ID: 19679513
[TBL] [Abstract][Full Text] [Related]
11. Neighbor joining algorithms for inferring phylogenies via LCA distances.
Gronau I; Moran S
J Comput Biol; 2007; 14(1):1-15. PubMed ID: 17381342
[TBL] [Abstract][Full Text] [Related]
12. Relaxed neighbor joining: a fast distance-based phylogenetic tree construction method.
Evans J; Sheneman L; Foster J
J Mol Evol; 2006 Jun; 62(6):785-92. PubMed ID: 16752216
[TBL] [Abstract][Full Text] [Related]
13. Fast NJ-like algorithms to deal with incomplete distance matrices.
Criscuolo A; Gascuel O
BMC Bioinformatics; 2008 Mar; 9():166. PubMed ID: 18366787
[TBL] [Abstract][Full Text] [Related]
14. Fast computation of distance estimators.
Elias I; Lagergren J
BMC Bioinformatics; 2007 Mar; 8():89. PubMed ID: 17355623
[TBL] [Abstract][Full Text] [Related]
15. Reconstructing ancestral genomic sequences by co-evolution: formal definitions, computational issues, and biological examples.
Tuller T; Birin H; Kupiec M; Ruppin E
J Comput Biol; 2010 Sep; 17(9):1327-44. PubMed ID: 20874411
[TBL] [Abstract][Full Text] [Related]
16. Mathematical and Simulation-Based Analysis of the Behavior of Admixed Taxa in the Neighbor-Joining Algorithm.
Kim J; Disanto F; Kopelman NM; Rosenberg NA
Bull Math Biol; 2019 Feb; 81(2):452-493. PubMed ID: 29876842
[TBL] [Abstract][Full Text] [Related]
17. Constructing splits graphs.
Dress AW; Huson DH
IEEE/ACM Trans Comput Biol Bioinform; 2004; 1(3):109-15. PubMed ID: 17048386
[TBL] [Abstract][Full Text] [Related]
18. Genome BLAST distance phylogenies inferred from whole plastid and whole mitochondrion genome sequences.
Auch AF; Henz SR; Holland BR; Göker M
BMC Bioinformatics; 2006 Jul; 7():350. PubMed ID: 16854218
[TBL] [Abstract][Full Text] [Related]
19. Consistency of topological moves based on the balanced minimum evolution principle of phylogenetic inference.
Bordewich M; Gascuel O; Huber KT; Moulton V
IEEE/ACM Trans Comput Biol Bioinform; 2009; 6(1):110-7. PubMed ID: 19179704
[TBL] [Abstract][Full Text] [Related]
20. Evaluating the performance of a successive-approximations approach to parameter optimization in maximum-likelihood phylogeny estimation.
Sullivan J; Abdo Z; Joyce P; Swofford DL
Mol Biol Evol; 2005 Jun; 22(6):1386-92. PubMed ID: 15758203
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]