BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

94 related articles for article (PubMed ID: 21355503)

  • 1. Prediction of inter-residue contact clusters from hydrophobic cores.
    Chen P; Liu C; Burge L; Mahmood M; Southerland W; Gloster C
    Int J Data Min Bioinform; 2010; 4(6):722-34. PubMed ID: 21355503
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Prediction of inter-residue contact clusters from hydrophobic cores.
    Chen P; Liu C; Burge L; Mahmood M; Southerland W; Gloster C
    Int J Data Min Bioinform; 2008 Dec; 2008():703-708. PubMed ID: 20802820
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A two-stage approach for improved prediction of residue contact maps.
    Vullo A; Walsh I; Pollastri G
    BMC Bioinformatics; 2006 Mar; 7():180. PubMed ID: 16573808
    [TBL] [Abstract][Full Text] [Related]  

  • 4. ISSEC: inferring contacts among protein secondary structure elements using deep object detection.
    Zhang Q; Zhu J; Ju F; Kong L; Sun S; Zheng WM; Bu D
    BMC Bioinformatics; 2020 Nov; 21(1):503. PubMed ID: 33153432
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Towards accurate residue-residue hydrophobic contact prediction for alpha helical proteins via integer linear optimization.
    Rajgaria R; McAllister SR; Floudas CA
    Proteins; 2009 Mar; 74(4):929-47. PubMed ID: 18767158
    [TBL] [Abstract][Full Text] [Related]  

  • 6. OMPcontact: An Outer Membrane Protein Inter-Barrel Residue Contact Prediction Method.
    Zhang L; Wang H; Yan L; Su L; Xu D
    J Comput Biol; 2017 Mar; 24(3):217-228. PubMed ID: 27513917
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Identification of residue pairing in interacting β-strands from a predicted residue contact map.
    Mao W; Wang T; Zhang W; Gong H
    BMC Bioinformatics; 2018 Apr; 19(1):146. PubMed ID: 29673311
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Sequence based residue depth prediction using evolutionary information and predicted secondary structure.
    Zhang H; Zhang T; Chen K; Shen S; Ruan J; Kurgan L
    BMC Bioinformatics; 2008 Sep; 9():388. PubMed ID: 18803867
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Prediction of inter-residue contacts map based on genetic algorithm optimized radial basis function neural network and binary input encoding scheme.
    Zhang GZ; Huang DS
    J Comput Aided Mol Des; 2004 Dec; 18(12):797-810. PubMed ID: 16075311
    [TBL] [Abstract][Full Text] [Related]  

  • 10. COMSAT: Residue contact prediction of transmembrane proteins based on support vector machines and mixed integer linear programming.
    Zhang H; Huang Q; Bei Z; Wei Y; Floudas CA
    Proteins; 2016 Mar; 84(3):332-48. PubMed ID: 26756402
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Introducing a Clustering Step in a Consensus Approach for the Scoring of Protein-Protein Docking Models.
    Chermak E; De Donato R; Lensink MF; Petta A; Serra L; Scarano V; Cavallo L; Oliva R
    PLoS One; 2016; 11(11):e0166460. PubMed ID: 27846259
    [TBL] [Abstract][Full Text] [Related]  

  • 12. R2C: improving ab initio residue contact map prediction using dynamic fusion strategy and Gaussian noise filter.
    Yang J; Jin QY; Zhang B; Shen HB
    Bioinformatics; 2016 Aug; 32(16):2435-43. PubMed ID: 27153618
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Prediction of beta-turns at over 80% accuracy based on an ensemble of predicted secondary structures and multiple alignments.
    Zheng C; Kurgan L
    BMC Bioinformatics; 2008 Oct; 9():430. PubMed ID: 18847492
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Prediction of protein B-factors using multi-class bounded SVM.
    Chen P; Wang B; Wong HS; Huang DS
    Protein Pept Lett; 2007; 14(2):185-90. PubMed ID: 17305606
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Sequence-based identification of interface residues by an integrative profile combining hydrophobic and evolutionary information.
    Chen P; Li J
    BMC Bioinformatics; 2010 Jul; 11():402. PubMed ID: 20667087
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Inter-residue interactions in protein folding and stability.
    Gromiha MM; Selvaraj S
    Prog Biophys Mol Biol; 2004 Oct; 86(2):235-77. PubMed ID: 15288760
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Predicting protein inter-residue contacts using composite likelihood maximization and deep learning.
    Zhang H; Zhang Q; Ju F; Zhu J; Gao Y; Xie Z; Deng M; Sun S; Zheng WM; Bu D
    BMC Bioinformatics; 2019 Oct; 20(1):537. PubMed ID: 31664895
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Enhancing protein contact map prediction accuracy via ensembles of inter-residue distance predictors.
    Newton MAH; Rahman J; Zaman R; Sattar A
    Comput Biol Chem; 2022 Aug; 99():107700. PubMed ID: 35665657
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Protein contact prediction by integrating deep multiple sequence alignments, coevolution and machine learning.
    Adhikari B; Hou J; Cheng J
    Proteins; 2018 Mar; 86 Suppl 1(Suppl 1):84-96. PubMed ID: 29047157
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Evolution and similarity evaluation of protein structures in contact map space.
    Gupta N; Mangal N; Biswas S
    Proteins; 2005 May; 59(2):196-204. PubMed ID: 15726585
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 5.