These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

98 related articles for article (PubMed ID: 21357134)

  • 1. Using a FASTA Sequence Database Similarity Search.
    Mount DW
    CSH Protoc; 2007 Jul; 2007():pdb.top16. PubMed ID: 21357134
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Searching protein sequence libraries: comparison of the sensitivity and selectivity of the Smith-Waterman and FASTA algorithms.
    Pearson WR
    Genomics; 1991 Nov; 11(3):635-50. PubMed ID: 1774068
    [TBL] [Abstract][Full Text] [Related]  

  • 3. BLAST and FASTA similarity searching for multiple sequence alignment.
    Pearson WR
    Methods Mol Biol; 2014; 1079():75-101. PubMed ID: 24170396
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Sensitivity and selectivity in protein similarity searches: a comparison of Smith-Waterman in hardware to BLAST and FASTA.
    Shpaer EG; Robinson M; Yee D; Candlin JD; Mines R; Hunkapiller T
    Genomics; 1996 Dec; 38(2):179-91. PubMed ID: 8954800
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Using the Basic Local Alignment Search Tool (BLAST).
    Mount DW
    CSH Protoc; 2007 Jul; 2007():pdb.top17. PubMed ID: 21357135
    [TBL] [Abstract][Full Text] [Related]  

  • 6. SALSA: improved protein database searching by a new algorithm for assembly of sequence fragments into gapped alignments.
    Rognes T; Seeberg E
    Bioinformatics; 1998; 14(10):839-45. PubMed ID: 9927712
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Comparison of methods for searching protein sequence databases.
    Pearson WR
    Protein Sci; 1995 Jun; 4(6):1145-60. PubMed ID: 7549879
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Finding Protein and Nucleotide Similarities with FASTA.
    Pearson WR
    Curr Protoc Bioinformatics; 2016 Mar; 53():3.9.1-3.9.25. PubMed ID: 27010337
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation.
    Rognes T
    BMC Bioinformatics; 2011 Jun; 12():221. PubMed ID: 21631914
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Rapid and sensitive sequence comparison with FASTP and FASTA.
    Pearson WR
    Methods Enzymol; 1990; 183():63-98. PubMed ID: 2156132
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Empirical statistical estimates for sequence similarity searches.
    Pearson WR
    J Mol Biol; 1998 Feb; 276(1):71-84. PubMed ID: 9514730
    [TBL] [Abstract][Full Text] [Related]  

  • 12. FASTA-SWAP and FASTA-PAT: pattern database searches using combinations of aligned amino acids, and a novel scoring theory.
    Ladunga I; Wiese BA; Smith RF
    J Mol Biol; 1996 Jun; 259(4):840-54. PubMed ID: 8683587
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Searching DNA databases for similarities to DNA sequences: when is a match significant?
    Anderson I; Brass A
    Bioinformatics; 1998; 14(4):349-56. PubMed ID: 9632830
    [TBL] [Abstract][Full Text] [Related]  

  • 14. SSAHA: a fast search method for large DNA databases.
    Ning Z; Cox AJ; Mullikin JC
    Genome Res; 2001 Oct; 11(10):1725-9. PubMed ID: 11591649
    [TBL] [Abstract][Full Text] [Related]  

  • 15. IMPALA: matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices.
    Schäffer AA; Wolf YI; Ponting CP; Koonin EV; Aravind L; Altschul SF
    Bioinformatics; 1999 Dec; 15(12):1000-11. PubMed ID: 10745990
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Database similarity searches.
    Plewniak F
    Methods Mol Biol; 2008; 484():361-78. PubMed ID: 18592192
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Visual BLAST and visual FASTA: graphic workbenches for interactive analysis of full BLAST and FASTA outputs under MICROSOFT WINDOWS 95/NT.
    Durand P; Canard L; Mornon JP
    Comput Appl Biosci; 1997 Aug; 13(4):407-13. PubMed ID: 9283755
    [TBL] [Abstract][Full Text] [Related]  

  • 18. SST: an algorithm for finding near-exact sequence matches in time proportional to the logarithm of the database size.
    Giladi E; Walker MG; Wang JZ; Volkmuth W
    Bioinformatics; 2002 Jun; 18(6):873-7. PubMed ID: 12075023
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Finding protein and nucleotide similarities with FASTA.
    Pearson W
    Curr Protoc Bioinformatics; 2004 Feb; Chapter 3():Unit3.9. PubMed ID: 18428723
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Combining sensitive database searches with multiple intermediates to detect distant homologues.
    Salamov AA; Suwa M; Orengo CA; Swindells MB
    Protein Eng; 1999 Feb; 12(2):95-100. PubMed ID: 10195280
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 5.