433 related articles for article (PubMed ID: 21365494)
1. SNP discovery by transcriptome pyrosequencing.
Barbazuk WB; Schnable PS
Methods Mol Biol; 2011; 729():225-46. PubMed ID: 21365494
[TBL] [Abstract][Full Text] [Related]
2. SNP discovery via 454 transcriptome sequencing.
Barbazuk WB; Emrich SJ; Chen HD; Li L; Schnable PS
Plant J; 2007 Sep; 51(5):910-8. PubMed ID: 17662031
[TBL] [Abstract][Full Text] [Related]
3. Discovery of single-nucleotide polymorphisms (SNPs) in the uncharacterized genome of the ascomycete Ophiognomonia clavigignenti-juglandacearum from 454 sequence data.
Broders KD; Woeste KE; San Miguel PJ; Westerman RP; Boland GJ
Mol Ecol Resour; 2011 Jul; 11(4):693-702. PubMed ID: 21676199
[TBL] [Abstract][Full Text] [Related]
4. Mining SNPs from DNA sequence data; computational approaches to SNP discovery and analysis.
van Oeveren J; Janssen A
Methods Mol Biol; 2009; 578():73-91. PubMed ID: 19768587
[TBL] [Abstract][Full Text] [Related]
5. High-throughput identification, database storage and analysis of SNPs in EST sequences.
Useche FJ; Gao G; Harafey M; Rafalski A
Genome Inform; 2001; 12():194-203. PubMed ID: 11791238
[TBL] [Abstract][Full Text] [Related]
6. Transcriptome sequencing and high-resolution melt analysis advance single nucleotide polymorphism discovery in duplicated salmonids.
Seeb JE; Pascal CE; Grau ED; Seeb LW; Templin WD; Harkins T; Roberts SB
Mol Ecol Resour; 2011 Mar; 11(2):335-48. PubMed ID: 21429141
[TBL] [Abstract][Full Text] [Related]
7. Coverage-based consensus calling (CbCC) of short sequence reads and comparison of CbCC results to identify SNPs in chickpea (Cicer arietinum; Fabaceae), a crop species without a reference genome.
Azam S; Thakur V; Ruperao P; Shah T; Balaji J; Amindala B; Farmer AD; Studholme DJ; May GD; Edwards D; Jones JD; Varshney RK
Am J Bot; 2012 Feb; 99(2):186-92. PubMed ID: 22301893
[TBL] [Abstract][Full Text] [Related]
8. Single nucleotide polymorphism (SNP) discovery in the polyploid Brassica napus using Solexa transcriptome sequencing.
Trick M; Long Y; Meng J; Bancroft I
Plant Biotechnol J; 2009 May; 7(4):334-46. PubMed ID: 19207216
[TBL] [Abstract][Full Text] [Related]
9. Rapid genetic mapping of ESTs using SNP pyrosequencing and indel analysis.
Ching A; Rafalski A
Cell Mol Biol Lett; 2002; 7(2B):803-10. PubMed ID: 12378241
[TBL] [Abstract][Full Text] [Related]
10. SNP-PHAGE--High throughput SNP discovery pipeline.
Matukumalli LK; Grefenstette JJ; Hyten DL; Choi IY; Cregan PB; Van Tassell CP
BMC Bioinformatics; 2006 Oct; 7():468. PubMed ID: 17059604
[TBL] [Abstract][Full Text] [Related]
11. De novo transcriptome characterization and development of genomic tools for Scabiosa columbaria L. using next-generation sequencing techniques.
Angeloni F; Wagemaker CA; Jetten MS; Op den Camp HJ; Janssen-Megens EM; Francoijs KJ; Stunnenberg HG; Ouborg NJ
Mol Ecol Resour; 2011 Jul; 11(4):662-74. PubMed ID: 21676196
[TBL] [Abstract][Full Text] [Related]
12. Analysis of the prostate cancer cell line LNCaP transcriptome using a sequencing-by-synthesis approach.
Bainbridge MN; Warren RL; Hirst M; Romanuik T; Zeng T; Go A; Delaney A; Griffith M; Hickenbotham M; Magrini V; Mardis ER; Sadar MD; Siddiqui AS; Marra MA; Jones SJ
BMC Genomics; 2006 Sep; 7():246. PubMed ID: 17010196
[TBL] [Abstract][Full Text] [Related]
13. Transcriptome analysis of Capsicum annuum varieties Mandarin and Blackcluster: assembly, annotation and molecular marker discovery.
Ahn YK; Tripathi S; Kim JH; Cho YI; Lee HE; Kim DS; Woo JG; Cho MC
Gene; 2014 Jan; 533(2):494-9. PubMed ID: 24125952
[TBL] [Abstract][Full Text] [Related]
14. SNP-VISTA: an interactive SNP visualization tool.
Shah N; Teplitsky MV; Minovitsky S; Pennacchio LA; Hugenholtz P; Hamann B; Dubchak IL
BMC Bioinformatics; 2005 Dec; 6():292. PubMed ID: 16336665
[TBL] [Abstract][Full Text] [Related]
15. SNP discovery in black cottonwood (Populus trichocarpa) by population transcriptome resequencing.
Geraldes A; Pang J; Thiessen N; Cezard T; Moore R; Zhao Y; Tam A; Wang S; Friedmann M; Birol I; Jones SJ; Cronk QC; Douglas CJ
Mol Ecol Resour; 2011 Mar; 11 Suppl 1():81-92. PubMed ID: 21429165
[TBL] [Abstract][Full Text] [Related]
16. Developing genomic resources in two Linum species via 454 pyrosequencing and genomic reduction.
Fu YB; Peterson GW
Mol Ecol Resour; 2012 May; 12(3):492-500. PubMed ID: 22177006
[TBL] [Abstract][Full Text] [Related]
17. Sequencing Medicago truncatula expressed sequenced tags using 454 Life Sciences technology.
Cheung F; Haas BJ; Goldberg SM; May GD; Xiao Y; Town CD
BMC Genomics; 2006 Oct; 7():272. PubMed ID: 17062153
[TBL] [Abstract][Full Text] [Related]
18. Preparation of normalized cDNA libraries for 454 Titanium transcriptome sequencing.
Lai Z; Zou Y; Kane NC; Choi JH; Wang X; Rieseberg LH
Methods Mol Biol; 2012; 888():119-33. PubMed ID: 22665279
[TBL] [Abstract][Full Text] [Related]
19. De novo transcriptome assembly and polymorphism detection in the flowering plant Silene vulgaris (Caryophyllaceae).
Sloan DB; Keller SR; Berardi AE; Sanderson BJ; Karpovich JF; Taylor DR
Mol Ecol Resour; 2012 Mar; 12(2):333-43. PubMed ID: 21999839
[TBL] [Abstract][Full Text] [Related]
20. SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries.
Van Tassell CP; Smith TP; Matukumalli LK; Taylor JF; Schnabel RD; Lawley CT; Haudenschild CD; Moore SS; Warren WC; Sonstegard TS
Nat Methods; 2008 Mar; 5(3):247-52. PubMed ID: 18297082
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]