110 related articles for article (PubMed ID: 21365496)
1. Generation of a large catalog of unique transcripts for whole-genome expression analysis in nonmodel species.
Bellin D; Ferrarini A; Delledonne M
Methods Mol Biol; 2011; 729():257-69. PubMed ID: 21365496
[TBL] [Abstract][Full Text] [Related]
2. Combining next-generation pyrosequencing with microarray for large scale expression analysis in non-model species.
Bellin D; Ferrarini A; Chimento A; Kaiser O; Levenkova N; Bouffard P; Delledonne M
BMC Genomics; 2009 Nov; 10():555. PubMed ID: 19930683
[TBL] [Abstract][Full Text] [Related]
3. Strategies for transcriptome analysis in nonmodel plants.
Ward JA; Ponnala L; Weber CA
Am J Bot; 2012 Feb; 99(2):267-76. PubMed ID: 22301897
[TBL] [Abstract][Full Text] [Related]
4. Benchmarking next-generation transcriptome sequencing for functional and evolutionary genomics.
Gibbons JG; Janson EM; Hittinger CT; Johnston M; Abbot P; Rokas A
Mol Biol Evol; 2009 Dec; 26(12):2731-44. PubMed ID: 19706727
[TBL] [Abstract][Full Text] [Related]
5. Sequencing Medicago truncatula expressed sequenced tags using 454 Life Sciences technology.
Cheung F; Haas BJ; Goldberg SM; May GD; Xiao Y; Town CD
BMC Genomics; 2006 Oct; 7():272. PubMed ID: 17062153
[TBL] [Abstract][Full Text] [Related]
6. Short reads and nonmodel species: exploring the complexities of next-generation sequence assembly and SNP discovery in the absence of a reference genome.
Everett MV; Grau ED; Seeb JE
Mol Ecol Resour; 2011 Mar; 11 Suppl 1():93-108. PubMed ID: 21429166
[TBL] [Abstract][Full Text] [Related]
7. Characterization of 954 bovine full-CDS cDNA sequences.
Harhay GP; Sonstegard TS; Keele JW; Heaton MP; Clawson ML; Snelling WM; Wiedmann RT; Van Tassell CP; Smith TP
BMC Genomics; 2005 Nov; 6():166. PubMed ID: 16305752
[TBL] [Abstract][Full Text] [Related]
8. Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing.
Vera JC; Wheat CW; Fescemyer HW; Frilander MJ; Crawford DL; Hanski I; Marden JH
Mol Ecol; 2008 Apr; 17(7):1636-47. PubMed ID: 18266620
[TBL] [Abstract][Full Text] [Related]
9. What can next generation sequencing do for you? Next generation sequencing as a valuable tool in plant research.
Bräutigam A; Gowik U
Plant Biol (Stuttg); 2010 Nov; 12(6):831-41. PubMed ID: 21040298
[TBL] [Abstract][Full Text] [Related]
10. De novo assembly of expressed transcripts and global analysis of the Phalaenopsis aphrodite transcriptome.
Su CL; Chao YT; Alex Chang YC; Chen WC; Chen CY; Lee AY; Hwa KT; Shih MC
Plant Cell Physiol; 2011 Sep; 52(9):1501-14. PubMed ID: 21771864
[TBL] [Abstract][Full Text] [Related]
11. De novo transcriptome characterization and development of genomic tools for Scabiosa columbaria L. using next-generation sequencing techniques.
Angeloni F; Wagemaker CA; Jetten MS; Op den Camp HJ; Janssen-Megens EM; Francoijs KJ; Stunnenberg HG; Ouborg NJ
Mol Ecol Resour; 2011 Jul; 11(4):662-74. PubMed ID: 21676196
[TBL] [Abstract][Full Text] [Related]
12. Revealing impaired pathways in the an11 mutant by high-throughput characterization of Petunia axillaris and Petunia inflata transcriptomes.
Zenoni S; D'Agostino N; Tornielli GB; Quattrocchio F; Chiusano ML; Koes R; Zethof J; Guzzo F; Delledonne M; Frusciante L; Gerats T; Pezzotti M
Plant J; 2011 Oct; 68(1):11-27. PubMed ID: 21623977
[TBL] [Abstract][Full Text] [Related]
13. Critical assessment of assembly strategies for non-model species mRNA-Seq data and application of next-generation sequencing to the comparison of C(3) and C(4) species.
Bräutigam A; Mullick T; Schliesky S; Weber AP
J Exp Bot; 2011 May; 62(9):3093-102. PubMed ID: 21398430
[TBL] [Abstract][Full Text] [Related]
14. RNA sequencing and quantitation using the Helicos Genetic Analysis System.
Raz T; Causey M; Jones DR; Kieu A; Letovsky S; Lipson D; Thayer E; Thompson JF; Milos PM
Methods Mol Biol; 2011; 733():37-49. PubMed ID: 21431761
[TBL] [Abstract][Full Text] [Related]
15. [Transcriptomes for serial analysis of gene expression].
Marti J; Piquemal D; Manchon L; Commes T
J Soc Biol; 2002; 196(4):303-7. PubMed ID: 12645300
[TBL] [Abstract][Full Text] [Related]
16. Designing a transcriptome next-generation sequencing project for a nonmodel plant species.
Strickler SR; Bombarely A; Mueller LA
Am J Bot; 2012 Feb; 99(2):257-66. PubMed ID: 22268224
[TBL] [Abstract][Full Text] [Related]
17. Development of anonymous cDNA microarrays to study changes to the Senecio floral transcriptome during hybrid speciation.
Hegarty MJ; Jones JM; Wilson ID; Barker GL; Coghill JA; Sanchez-Baracaldo P; Liu G; Buggs RJ; Abbott RJ; Edwards KJ; Hiscock SJ
Mol Ecol; 2005 Jul; 14(8):2493-510. PubMed ID: 15969730
[TBL] [Abstract][Full Text] [Related]
18. Whole genome sequencing.
Ng PC; Kirkness EF
Methods Mol Biol; 2010; 628():215-26. PubMed ID: 20238084
[TBL] [Abstract][Full Text] [Related]
19. Genomics of Compositae weeds: EST libraries, microarrays, and evidence of introgression.
Lai Z; Kane NC; Kozik A; Hodgins KA; Dlugosch KM; Barker MS; Matvienko M; Yu Q; Turner KG; Pearl SA; Bell GD; Zou Y; Grassa C; Guggisberg A; Adams KL; Anderson JV; Horvath DP; Kesseli RV; Burke JM; Michelmore RW; Rieseberg LH
Am J Bot; 2012 Feb; 99(2):209-18. PubMed ID: 22058181
[TBL] [Abstract][Full Text] [Related]
20. Transcriptome analysis of an oil-rich race A strain of Botryococcus braunii (BOT-88-2) by de novo assembly of pyrosequencing cDNA reads.
Baba M; Ioki M; Nakajima N; Shiraiwa Y; Watanabe MM
Bioresour Technol; 2012 Apr; 109():282-6. PubMed ID: 22137751
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]