223 related articles for article (PubMed ID: 21391139)
1. Extension of molecular similarity analysis approach to classification of DNA sequences using DNA descriptors.
Jayalakshmi R; Natarajan R; Vivekanandan M
SAR QSAR Environ Res; 2011 Mar; 22(1-2):21-34. PubMed ID: 21391139
[TBL] [Abstract][Full Text] [Related]
2. Alignment-free sequence comparison using N-dimensional similarity space.
Jayalakshmi R; Natarajan R; Vivekanandan M; Natarajan GS
Curr Comput Aided Drug Des; 2010 Dec; 6(4):290-6. PubMed ID: 20883198
[TBL] [Abstract][Full Text] [Related]
3. A segmented principal component analysis-regression approach to quantitative structure-activity relationship modeling.
Hemmateenejad B; Elyasi M
Anal Chim Acta; 2009 Jul; 646(1-2):30-8. PubMed ID: 19523553
[TBL] [Abstract][Full Text] [Related]
4. A geometric invariant-based framework for the analysis of protein conformational space.
Tendulkar AV; Sohoni MA; Ogunnaike B; Wangikar PP
Bioinformatics; 2005 Sep; 21(18):3622-8. PubMed ID: 16096349
[TBL] [Abstract][Full Text] [Related]
5. MODEL-molecular descriptor lab: a web-based server for computing structural and physicochemical features of compounds.
Li ZR; Han LY; Xue Y; Yap CW; Li H; Jiang L; Chen YZ
Biotechnol Bioeng; 2007 Jun; 97(2):389-96. PubMed ID: 17013940
[TBL] [Abstract][Full Text] [Related]
6. Fast model-based protein homology detection without alignment.
Hochreiter S; Heusel M; Obermayer K
Bioinformatics; 2007 Jul; 23(14):1728-36. PubMed ID: 17488755
[TBL] [Abstract][Full Text] [Related]
7. Similarity/dissimilarity studies of protein sequences based on a new 2D graphical representation.
Yao YH; Dai Q; Li L; Nan XY; He PA; Zhang YZ
J Comput Chem; 2010 Apr; 31(5):1045-52. PubMed ID: 19777597
[TBL] [Abstract][Full Text] [Related]
8. Weighted relative entropy for alignment-free sequence comparison based on Markov model.
Chang G; Wang T
J Biomol Struct Dyn; 2011 Feb; 28(4):545-55. PubMed ID: 21142223
[TBL] [Abstract][Full Text] [Related]
9. Numerical characterization of DNA sequences based on digital signal method.
Qi ZH; Qi XQ
Comput Biol Med; 2009 Apr; 39(4):388-91. PubMed ID: 19261267
[TBL] [Abstract][Full Text] [Related]
10. 2D-RNA-coupling numbers: a new computational chemistry approach to link secondary structure topology with biological function.
González-Díaz H; Agüero-Chapin G; Varona J; Molina R; Delogu G; Santana L; Uriarte E; Podda G
J Comput Chem; 2007 Apr; 28(6):1049-56. PubMed ID: 17279496
[TBL] [Abstract][Full Text] [Related]
11. Alignment method for spectrograms of DNA sequences.
Bucur A; van Leeuwen J; Dimitrova N; Mittal C
IEEE Trans Inf Technol Biomed; 2010 Jan; 14(1):3-9. PubMed ID: 19789120
[TBL] [Abstract][Full Text] [Related]
12. How similar are similarity searching methods? A principal component analysis of molecular descriptor space.
Bender A; Jenkins JL; Scheiber J; Sukuru SC; Glick M; Davies JW
J Chem Inf Model; 2009 Jan; 49(1):108-19. PubMed ID: 19123924
[TBL] [Abstract][Full Text] [Related]
13. Accurate prediction for atomic-level protein design and its application in diversifying the near-optimal sequence space.
Fromer M; Yanover C
Proteins; 2009 May; 75(3):682-705. PubMed ID: 19003998
[TBL] [Abstract][Full Text] [Related]
14. A novel method for comparative analysis of DNA sequences by Ramanujan-Fourier transform.
Yin C; Yin XE; Wang J
J Comput Biol; 2014 Dec; 21(12):867-79. PubMed ID: 25302665
[TBL] [Abstract][Full Text] [Related]
15. transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences.
Bininda-Emonds OR
BMC Bioinformatics; 2005 Jun; 6():156. PubMed ID: 15969769
[TBL] [Abstract][Full Text] [Related]
16. The interplay of descriptor-based computational analysis with pharmacophore modeling builds the basis for a novel classification scheme for feruloyl esterases.
Udatha DB; Kouskoumvekaki I; Olsson L; Panagiotou G
Biotechnol Adv; 2011; 29(1):94-110. PubMed ID: 20851174
[TBL] [Abstract][Full Text] [Related]
17. Novel 2D maps and coupling numbers for protein sequences. The first QSAR study of polygalacturonases; isolation and prediction of a novel sequence from Psidium guajava L.
Agüero-Chapin G; González-Díaz H; Molina R; Varona-Santos J; Uriarte E; González-Díaz Y
FEBS Lett; 2006 Feb; 580(3):723-30. PubMed ID: 16413021
[TBL] [Abstract][Full Text] [Related]
18. A segmented principal component analysis--regression approach to QSAR study of peptides.
Hemmateenejad B; Miri R; Elyasi M
J Theor Biol; 2012 Jul; 305():37-44. PubMed ID: 22575548
[TBL] [Abstract][Full Text] [Related]
19. DNA computation model to solve 0-1 programming problem.
Zhang F; Yin Z; Liu B; Xu J
Biosystems; 2004; 74(1-3):9-14. PubMed ID: 15125989
[TBL] [Abstract][Full Text] [Related]
20. Natural similarity measures between position frequency matrices with an application to clustering.
Pape UJ; Rahmann S; Vingron M
Bioinformatics; 2008 Feb; 24(3):350-7. PubMed ID: 18174183
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
