These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

110 related articles for article (PubMed ID: 21393655)

  • 1. TRIAL: a tool for finding distant structural similarities.
    Venkateswaran JG; Song B; Kahveci T; Jermaine C
    IEEE/ACM Trans Comput Biol Bioinform; 2011; 8(3):819-31. PubMed ID: 21393655
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Multiple structure alignment by optimal RMSD implies that the average structure is a consensus.
    Wang X; Snoeyink J
    Comput Syst Bioinformatics Conf; 2006; ():79-87. PubMed ID: 17369627
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Detailed protein sequence alignment based on Spectral Similarity Score (SSS).
    Gupta K; Thomas D; Vidya SV; Venkatesh KV; Ramakumar S
    BMC Bioinformatics; 2005 Apr; 6():105. PubMed ID: 15850477
    [TBL] [Abstract][Full Text] [Related]  

  • 4. DALIX: optimal DALI protein structure alignment.
    Wohlers I; Andonov R; Klau GW
    IEEE/ACM Trans Comput Biol Bioinform; 2013; 10(1):26-36. PubMed ID: 23702541
    [TBL] [Abstract][Full Text] [Related]  

  • 5. MUSTANG: a multiple structural alignment algorithm.
    Konagurthu AS; Whisstock JC; Stuckey PJ; Lesk AM
    Proteins; 2006 Aug; 64(3):559-74. PubMed ID: 16736488
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Fr-TM-align: a new protein structural alignment method based on fragment alignments and the TM-score.
    Pandit SB; Skolnick J
    BMC Bioinformatics; 2008 Dec; 9():531. PubMed ID: 19077267
    [TBL] [Abstract][Full Text] [Related]  

  • 7. TM-align: a protein structure alignment algorithm based on the TM-score.
    Zhang Y; Skolnick J
    Nucleic Acids Res; 2005; 33(7):2302-9. PubMed ID: 15849316
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Accuracy of structure-based sequence alignment of automatic methods.
    Kim C; Lee B
    BMC Bioinformatics; 2007 Sep; 8():355. PubMed ID: 17883866
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Defining and computing optimum RMSD for gapped and weighted multiple-structure alignment.
    Wang X; Snoeyink J
    IEEE/ACM Trans Comput Biol Bioinform; 2008; 5(4):525-33. PubMed ID: 18989040
    [TBL] [Abstract][Full Text] [Related]  

  • 10. SnapDRAGON: a method to delineate protein structural domains from sequence data.
    George RA; Heringa J
    J Mol Biol; 2002 Feb; 316(3):839-51. PubMed ID: 11866536
    [TBL] [Abstract][Full Text] [Related]  

  • 11. SANA: an algorithm for sequential and non-sequential protein structure alignment.
    Wang L; Wu LY; Wang Y; Zhang XS; Chen L
    Amino Acids; 2010 Jul; 39(2):417-25. PubMed ID: 20127263
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Structure-based evaluation of sequence comparison and fold recognition alignment accuracy.
    Domingues FS; Lackner P; Andreeva A; Sippl MJ
    J Mol Biol; 2000 Apr; 297(4):1003-13. PubMed ID: 10736233
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A context evaluation approach for structural comparison of proteins using cross entropy over n-gram modelling.
    Razmara J; Deris SB; Parvizpour S
    Comput Biol Med; 2013 Oct; 43(10):1614-21. PubMed ID: 24034753
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Efficient approaches for retrieving protein tertiary structures.
    Mirceva G; Cingovska I; Dimov Z; Davcev D
    IEEE/ACM Trans Comput Biol Bioinform; 2012; 9(4):1166-79. PubMed ID: 22025763
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Algorithms for optimal protein structure alignment.
    Poleksic A
    Bioinformatics; 2009 Nov; 25(21):2751-6. PubMed ID: 19734152
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Evaluation of methods for predicting the topology of beta-barrel outer membrane proteins and a consensus prediction method.
    Bagos PG; Liakopoulos TD; Hamodrakas SJ
    BMC Bioinformatics; 2005 Jan; 6():7. PubMed ID: 15647112
    [TBL] [Abstract][Full Text] [Related]  

  • 17. CAALIGN: a program for pairwise and multiple protein-structure alignment.
    Oldfield TJ
    Acta Crystallogr D Biol Crystallogr; 2007 Apr; 63(Pt 4):514-25. PubMed ID: 17372357
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Within the twilight zone: a sensitive profile-profile comparison tool based on information theory.
    Yona G; Levitt M
    J Mol Biol; 2002 Feb; 315(5):1257-75. PubMed ID: 11827492
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Estimating quality of template-based protein models by alignment stability.
    Chen H; Kihara D
    Proteins; 2008 May; 71(3):1255-74. PubMed ID: 18041762
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Hierarchical protein structure superposition using both secondary structure and atomic representations.
    Singh AP; Brutlag DL
    Proc Int Conf Intell Syst Mol Biol; 1997; 5():284-93. PubMed ID: 9322051
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.