BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

232 related articles for article (PubMed ID: 21398628)

  • 1. GPHMM: an integrated hidden Markov model for identification of copy number alteration and loss of heterozygosity in complex tumor samples using whole genome SNP arrays.
    Li A; Liu Z; Lezon-Geyda K; Sarkar S; Lannin D; Schulz V; Krop I; Winer E; Harris L; Tuck D
    Nucleic Acids Res; 2011 Jul; 39(12):4928-41. PubMed ID: 21398628
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Comparison of methods to detect copy number alterations in cancer using simulated and real genotyping data.
    Mosén-Ansorena D; Aransay AM; Rodríguez-Ezpeleta N
    BMC Bioinformatics; 2012 Aug; 13():192. PubMed ID: 22870940
    [TBL] [Abstract][Full Text] [Related]  

  • 3. CLImAT-HET: detecting subclonal copy number alterations and loss of heterozygosity in heterogeneous tumor samples from whole-genome sequencing data.
    Yu Z; Li A; Wang M
    BMC Med Genomics; 2017 Mar; 10(1):15. PubMed ID: 28298214
    [TBL] [Abstract][Full Text] [Related]  

  • 4. TAFFYS: An Integrated Tool for Comprehensive Analysis of Genomic Aberrations in Tumor Samples.
    Liu Y; Li A; Feng H; Wang M
    PLoS One; 2015; 10(6):e0129835. PubMed ID: 26111017
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Precise inference of copy number alterations in tumor samples from SNP arrays.
    Chen GK; Chang X; Curtis C; Wang K
    Bioinformatics; 2013 Dec; 29(23):2964-70. PubMed ID: 24021380
    [TBL] [Abstract][Full Text] [Related]  

  • 6. MixHMM: inferring copy number variation and allelic imbalance using SNP arrays and tumor samples mixed with stromal cells.
    Liu Z; Li A; Schulz V; Chen M; Tuck D
    PLoS One; 2010 Jun; 5(6):e10909. PubMed ID: 20532221
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Integrated analysis of copy number and loss of heterozygosity in primary breast carcinomas using high-density SNP array.
    Ching HC; Naidu R; Seong MK; Har YC; Taib NA
    Int J Oncol; 2011 Sep; 39(3):621-33. PubMed ID: 21687935
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A Hidden Markov Model to estimate population mixture and allelic copy-numbers in cancers using Affymetrix SNP arrays.
    Lamy P; Andersen CL; Dyrskjot L; Torring N; Wiuf C
    BMC Bioinformatics; 2007 Nov; 8():434. PubMed ID: 17996079
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Inferring loss-of-heterozygosity from unpaired tumors using high-density oligonucleotide SNP arrays.
    Beroukhim R; Lin M; Park Y; Hao K; Zhao X; Garraway LA; Fox EA; Hochberg EP; Mellinghoff IK; Hofer MD; Descazeaud A; Rubin MA; Meyerson M; Wong WH; Sellers WR; Li C
    PLoS Comput Biol; 2006 May; 2(5):e41. PubMed ID: 16699594
    [TBL] [Abstract][Full Text] [Related]  

  • 10. QuantiSNP: an Objective Bayes Hidden-Markov Model to detect and accurately map copy number variation using SNP genotyping data.
    Colella S; Yau C; Taylor JM; Mirza G; Butler H; Clouston P; Bassett AS; Seller A; Holmes CC; Ragoussis J
    Nucleic Acids Res; 2007; 35(6):2013-25. PubMed ID: 17341461
    [TBL] [Abstract][Full Text] [Related]  

  • 11. PAIR: paired allelic log-intensity-ratio-based normalization method for SNP-CGH arrays.
    Yang S; Pounds S; Zhang K; Fang Z
    Bioinformatics; 2013 Feb; 29(3):299-307. PubMed ID: 23196989
    [TBL] [Abstract][Full Text] [Related]  

  • 12. PICNIC: an algorithm to predict absolute allelic copy number variation with microarray cancer data.
    Greenman CD; Bignell G; Butler A; Edkins S; Hinton J; Beare D; Swamy S; Santarius T; Chen L; Widaa S; Futreal PA; Stratton MR
    Biostatistics; 2010 Jan; 11(1):164-75. PubMed ID: 19837654
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Distinguishing somatic and germline copy number events in cancer patient DNA hybridized to whole-genome SNP genotyping arrays.
    Ha G; Shah S
    Methods Mol Biol; 2013; 973():355-72. PubMed ID: 23412801
    [TBL] [Abstract][Full Text] [Related]  

  • 14. High-resolution genomic profiling of chromosomal aberrations using Infinium whole-genome genotyping.
    Peiffer DA; Le JM; Steemers FJ; Chang W; Jenniges T; Garcia F; Haden K; Li J; Shaw CA; Belmont J; Cheung SW; Shen RM; Barker DL; Gunderson KL
    Genome Res; 2006 Sep; 16(9):1136-48. PubMed ID: 16899659
    [TBL] [Abstract][Full Text] [Related]  

  • 15. SNPExpress: integrated visualization of genome-wide genotypes, copy numbers and gene expression levels.
    Sanders MA; Verhaak RG; Geertsma-Kleinekoort WM; Abbas S; Horsman S; van der Spek PJ; Löwenberg B; Valk PJ
    BMC Genomics; 2008 Jan; 9():41. PubMed ID: 18221515
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Ploidy status and copy number aberrations in primary glioblastomas defined by integrated analysis of allelic ratios, signal ratios and loss of heterozygosity using 500K SNP Mapping Arrays.
    Gardina PJ; Lo KC; Lee W; Cowell JK; Turpaz Y
    BMC Genomics; 2008 Oct; 9():489. PubMed ID: 18928532
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A robust algorithm for copy number detection using high-density oligonucleotide single nucleotide polymorphism genotyping arrays.
    Nannya Y; Sanada M; Nakazaki K; Hosoya N; Wang L; Hangaishi A; Kurokawa M; Chiba S; Bailey DK; Kennedy GC; Ogawa S
    Cancer Res; 2005 Jul; 65(14):6071-9. PubMed ID: 16024607
    [TBL] [Abstract][Full Text] [Related]  

  • 18. CLImAT: accurate detection of copy number alteration and loss of heterozygosity in impure and aneuploid tumor samples using whole-genome sequencing data.
    Yu Z; Liu Y; Shen Y; Wang M; Li A
    Bioinformatics; 2014 Sep; 30(18):2576-83. PubMed ID: 24845652
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Combined array-comparative genomic hybridization and single-nucleotide polymorphism-loss of heterozygosity analysis reveals complex genetic alterations in cervical cancer.
    Kloth JN; Oosting J; van Wezel T; Szuhai K; Knijnenburg J; Gorter A; Kenter GG; Fleuren GJ; Jordanova ES
    BMC Genomics; 2007 Feb; 8():53. PubMed ID: 17311676
    [TBL] [Abstract][Full Text] [Related]  

  • 20. CloneCNA: detecting subclonal somatic copy number alterations in heterogeneous tumor samples from whole-exome sequencing data.
    Yu Z; Li A; Wang M
    BMC Bioinformatics; 2016 Aug; 17():310. PubMed ID: 27538789
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.