93 related articles for article (PubMed ID: 21413817)
1. On the relevance of peptide sequence permutations in shotgun proteomics studies.
Yu L; Tan Y; Tsai Y; Goodlett DR; Polfer NC
J Proteome Res; 2011 May; 10(5):2409-16. PubMed ID: 21413817
[TBL] [Abstract][Full Text] [Related]
2. Improved peptide identification by targeted fragmentation using CID, HCD and ETD on an LTQ-Orbitrap Velos.
Frese CK; Altelaar AF; Hennrich ML; Nolting D; Zeller M; Griep-Raming J; Heck AJ; Mohammed S
J Proteome Res; 2011 May; 10(5):2377-88. PubMed ID: 21413819
[TBL] [Abstract][Full Text] [Related]
3. Improved peptide identification for proteomic analysis based on comprehensive characterization of electron transfer dissociation spectra.
Sun RX; Dong MQ; Song CQ; Chi H; Yang B; Xiu LY; Tao L; Jing ZY; Liu C; Wang LH; Fu Y; He SM
J Proteome Res; 2010 Dec; 9(12):6354-67. PubMed ID: 20883037
[TBL] [Abstract][Full Text] [Related]
4. Improving SRM assay development: a global comparison between triple quadrupole, ion trap, and higher energy CID peptide fragmentation spectra.
de Graaf EL; Altelaar AF; van Breukelen B; Mohammed S; Heck AJ
J Proteome Res; 2011 Sep; 10(9):4334-41. PubMed ID: 21726076
[TBL] [Abstract][Full Text] [Related]
5. Increasing information from shotgun proteomic data by accounting for misassigned precursor ion masses.
Scherl A; Tsai YS; Shaffer SA; Goodlett DR
Proteomics; 2008 Jul; 8(14):2791-7. PubMed ID: 18655048
[TBL] [Abstract][Full Text] [Related]
6. Pinpointing phosphorylation sites: Quantitative filtering and a novel site-specific x-ion fragment.
Kelstrup CD; Hekmat O; Francavilla C; Olsen JV
J Proteome Res; 2011 Jul; 10(7):2937-48. PubMed ID: 21526838
[TBL] [Abstract][Full Text] [Related]
7. Extended Range Proteomic Analysis (ERPA): a new and sensitive LC-MS platform for high sequence coverage of complex proteins with extensive post-translational modifications-comprehensive analysis of beta-casein and epidermal growth factor receptor (EGFR).
Wu SL; Kim J; Hancock WS; Karger B
J Proteome Res; 2005; 4(4):1155-70. PubMed ID: 16083266
[TBL] [Abstract][Full Text] [Related]
8. A systematic investigation into the nature of tryptic HCD spectra.
Michalski A; Neuhauser N; Cox J; Mann M
J Proteome Res; 2012 Nov; 11(11):5479-91. PubMed ID: 22998608
[TBL] [Abstract][Full Text] [Related]
9. Increased confidence in large-scale phosphoproteomics data by complementary mass spectrometric techniques and matching of phosphopeptide data sets.
Alcolea MP; Kleiner O; Cutillas PR
J Proteome Res; 2009 Aug; 8(8):3808-15. PubMed ID: 19537829
[TBL] [Abstract][Full Text] [Related]
10. Detection and validation of non-synonymous coding SNPs from orthogonal analysis of shotgun proteomics data.
Bunger MK; Cargile BJ; Sevinsky JR; Deyanova E; Yates NA; Hendrickson RC; Stephenson JL
J Proteome Res; 2007 Jun; 6(6):2331-40. PubMed ID: 17488105
[TBL] [Abstract][Full Text] [Related]
11. Proton transfer reactions for improved peptide characterisation.
Rožman M; Schneider A; Gaskell SJ
J Mass Spectrom; 2011 Jun; 46(6):529-34. PubMed ID: 21630380
[TBL] [Abstract][Full Text] [Related]
12. Proteome analysis of Sorangium cellulosum employing 2D-HPLC-MS/MS and improved database searching strategies for CID and ETD fragment spectra.
Leinenbach A; Hartmer R; Lubeck M; Kneissl B; Elnakady YA; Baessmann C; Müller R; Huber CG
J Proteome Res; 2009 Sep; 8(9):4350-61. PubMed ID: 19634914
[TBL] [Abstract][Full Text] [Related]
13. Charger: combination of signal processing and statistical learning algorithms for precursor charge-state determination from electron-transfer dissociation spectra.
Sadygov RG; Hao Z; Huhmer AF
Anal Chem; 2008 Jan; 80(2):376-86. PubMed ID: 18081262
[TBL] [Abstract][Full Text] [Related]
14. Robust estimation of peptide abundance ratios and rigorous scoring of their variability and bias in quantitative shotgun proteomics.
Pan C; Kora G; Tabb DL; Pelletier DA; McDonald WH; Hurst GB; Hettich RL; Samatova NF
Anal Chem; 2006 Oct; 78(20):7110-20. PubMed ID: 17037910
[TBL] [Abstract][Full Text] [Related]
15. Tandem mass spectrometric analysis of (13)C-containing ions from a mixture of homologous peptides differing by one mass unit at a residue.
Wada Y; Hisada M; Kaneko R; Naoki H; Matsuo T
J Mass Spectrom; 2000 Feb; 35(2):242-50. PubMed ID: 10679987
[TBL] [Abstract][Full Text] [Related]
16. Comparison of laser-induced dissociation and high-energy collision-induced dissociation using matrix-assisted laser desorption/ionization tandem time-of-flight (MALDI-TOF/TOF) for peptide and protein identification.
Macht M; Asperger A; Deininger SO
Rapid Commun Mass Spectrom; 2004; 18(18):2093-105. PubMed ID: 15378722
[TBL] [Abstract][Full Text] [Related]
17. Review of factors that influence the abundance of ions produced in a tandem mass spectrometer and statistical methods for discovering these factors.
Barton SJ; Whittaker JC
Mass Spectrom Rev; 2009; 28(1):177-87. PubMed ID: 18680189
[TBL] [Abstract][Full Text] [Related]
18. Statistical models for protein validation using tandem mass spectral data and protein amino acid sequence databases.
Sadygov RG; Liu H; Yates JR
Anal Chem; 2004 Mar; 76(6):1664-71. PubMed ID: 15018565
[TBL] [Abstract][Full Text] [Related]
19. Correlation of multiple peptide mass spectra for phosphoprotein identification.
Feng J; Garrett WM; Naiman DQ; Cooper B
J Proteome Res; 2009 Nov; 8(11):5396-405. PubMed ID: 19719328
[TBL] [Abstract][Full Text] [Related]
20. Passive and active fragment ion mass defect labeling: distinct proteomics potential of iodine-based reagents.
Shi Y; Bajrami B; Yao X
Anal Chem; 2009 Aug; 81(15):6438-48. PubMed ID: 19572545
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]