165 related articles for article (PubMed ID: 21415011)
1. Homolog-specific PCR primer design for profiling splice variants.
Srivastava GP; Hanumappa M; Kushwaha G; Nguyen HT; Xu D
Nucleic Acids Res; 2011 May; 39(10):e69. PubMed ID: 21415011
[TBL] [Abstract][Full Text] [Related]
2. Genome-scale probe and primer design with PRIMEGENS.
Srivastava GP; Xu D
Methods Mol Biol; 2007; 402():159-76. PubMed ID: 17951795
[TBL] [Abstract][Full Text] [Related]
3. PRIMEGENS-v2: genome-wide primer design for analyzing DNA methylation patterns of CpG islands.
Srivastava GP; Guo J; Shi H; Xu D
Bioinformatics; 2008 Sep; 24(17):1837-42. PubMed ID: 18579568
[TBL] [Abstract][Full Text] [Related]
4. PRIMEGENS: robust and efficient design of gene-specific probes for microarray analysis.
Xu D; Li G; Wu L; Zhou J; Xu Y
Bioinformatics; 2002 Nov; 18(11):1432-7. PubMed ID: 12424113
[TBL] [Abstract][Full Text] [Related]
5. BatchPrimer3: a high throughput web application for PCR and sequencing primer design.
You FM; Huo N; Gu YQ; Luo MC; Ma Y; Hane D; Lazo GR; Dvorak J; Anderson OD
BMC Bioinformatics; 2008 May; 9():253. PubMed ID: 18510760
[TBL] [Abstract][Full Text] [Related]
6. URPD: a specific product primer design tool.
Chuang LY; Cheng YH; Yang CH
BMC Res Notes; 2012 Jun; 5():306. PubMed ID: 22713312
[TBL] [Abstract][Full Text] [Related]
7. EasyExonPrimer: automated primer design for exon sequences.
Wu X; Munroe DJ
Appl Bioinformatics; 2006; 5(2):119-20. PubMed ID: 16722777
[TBL] [Abstract][Full Text] [Related]
8. RExPrimer: an integrated primer designing tool increases PCR effectiveness by avoiding 3' SNP-in-primer and mis-priming from structural variation.
Piriyapongsa J; Ngamphiw C; Assawamakin A; Wangkumhang P; Suwannasri P; Ruangrit U; Agavatpanitch G; Tongsima S
BMC Genomics; 2009 Dec; 10 Suppl 3(Suppl 3):S4. PubMed ID: 19958502
[TBL] [Abstract][Full Text] [Related]
9. GETPrime: a gene- or transcript-specific primer database for quantitative real-time PCR.
Gubelmann C; Gattiker A; Massouras A; Hens K; David F; Decouttere F; Rougemont J; Deplancke B
Database (Oxford); 2011; 2011():bar040. PubMed ID: 21917859
[TBL] [Abstract][Full Text] [Related]
10. MSP-HTPrimer: a high-throughput primer design tool to improve assay design for DNA methylation analysis in epigenetics.
Pandey RV; Pulverer W; Kallmeyer R; Beikircher G; Pabinger S; Kriegner A; Weinhäusel A
Clin Epigenetics; 2016; 8():101. PubMed ID: 27688817
[TBL] [Abstract][Full Text] [Related]
11. Design factors that influence PCR amplification success of cross-species primers among 1147 mammalian primer pairs.
Housley DJ; Zalewski ZA; Beckett SE; Venta PJ
BMC Genomics; 2006 Oct; 7():253. PubMed ID: 17029642
[TBL] [Abstract][Full Text] [Related]
12. Dual-genome primer design for construction of DNA microarrays.
Andersson A; Bernander R; Nilsson P
Bioinformatics; 2005 Feb; 21(3):325-32. PubMed ID: 15333463
[TBL] [Abstract][Full Text] [Related]
13. MSRE-HTPrimer: a high-throughput and genome-wide primer design pipeline optimized for epigenetic research.
Pandey RV; Pulverer W; Kallmeyer R; Beikircher G; Pabinger S; Kriegner A; Weinhäusel A
Clin Epigenetics; 2016; 8():26. PubMed ID: 26949424
[TBL] [Abstract][Full Text] [Related]
14. Computational tradeoffs in multiplex PCR assay design for SNP genotyping.
Rachlin J; Ding C; Cantor C; Kasif S
BMC Genomics; 2005 Jul; 6():102. PubMed ID: 16042802
[TBL] [Abstract][Full Text] [Related]
15. Primer-BLAST: a tool to design target-specific primers for polymerase chain reaction.
Ye J; Coulouris G; Zaretskaya I; Cutcutache I; Rozen S; Madden TL
BMC Bioinformatics; 2012 Jun; 13():134. PubMed ID: 22708584
[TBL] [Abstract][Full Text] [Related]
16. QuantPrime--a flexible tool for reliable high-throughput primer design for quantitative PCR.
Arvidsson S; Kwasniewski M; Riaño-Pachón DM; Mueller-Roeber B
BMC Bioinformatics; 2008 Nov; 9():465. PubMed ID: 18976492
[TBL] [Abstract][Full Text] [Related]
17. PRIMEGENSw3: a web-based tool for high-throughput primer and probe design.
Kushwaha G; Srivastava GP; Xu D
Methods Mol Biol; 2015; 1275():181-99. PubMed ID: 25697661
[TBL] [Abstract][Full Text] [Related]
18. MPprimer: a program for reliable multiplex PCR primer design.
Shen Z; Qu W; Wang W; Lu Y; Wu Y; Li Z; Hang X; Wang X; Zhao D; Zhang C
BMC Bioinformatics; 2010 Mar; 11():143. PubMed ID: 20298595
[TBL] [Abstract][Full Text] [Related]
19. Design of multiplex PCR primers using heuristic algorithm for sequential deletion applications.
Chen YF; Chen RC; Chan YK; Pan RH; Hseu YC; Lin E
Comput Biol Chem; 2009 Apr; 33(2):181-8. PubMed ID: 19211306
[TBL] [Abstract][Full Text] [Related]
20. MultiPrimer: software for multiplex primer design.
Lee C; Wu JS; Shiue YL; Liang HL
Appl Bioinformatics; 2006; 5(2):99-109. PubMed ID: 16722774
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]