BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

543 related articles for article (PubMed ID: 21421784)

  • 1. Assessing and improving methods used in operational taxonomic unit-based approaches for 16S rRNA gene sequence analysis.
    Schloss PD; Westcott SL
    Appl Environ Microbiol; 2011 May; 77(10):3219-26. PubMed ID: 21421784
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Broadscale Ecological Patterns Are Robust to Use of Exact Sequence Variants versus Operational Taxonomic Units.
    Glassman SI; Martiny JBH
    mSphere; 2018 Jul; 3(4):. PubMed ID: 30021874
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A comparison of methods for clustering 16S rRNA sequences into OTUs.
    Chen W; Zhang CK; Cheng Y; Zhang S; Zhao H
    PLoS One; 2013; 8(8):e70837. PubMed ID: 23967117
    [TBL] [Abstract][Full Text] [Related]  

  • 4. DBH: A de Bruijn graph-based heuristic method for clustering large-scale 16S rRNA sequences into OTUs.
    Wei ZG; Zhang SW
    J Theor Biol; 2017 Jul; 425():80-87. PubMed ID: 28454900
    [TBL] [Abstract][Full Text] [Related]  

  • 5. OptiFit: an Improved Method for Fitting Amplicon Sequences to Existing OTUs.
    Sovacool KL; Westcott SL; Mumphrey MB; Dotson GA; Schloss PD
    mSphere; 2022 Feb; 7(1):e0091621. PubMed ID: 35107341
    [TBL] [Abstract][Full Text] [Related]  

  • 6. A De Novo Robust Clustering Approach for Amplicon-Based Sequence Data.
    Bazin A; Debroas D; Mephu Nguifo E
    J Comput Biol; 2019 Jun; 26(6):618-624. PubMed ID: 30517025
    [No Abstract]   [Full Text] [Related]  

  • 7. hc-OTU: A Fast and Accurate Method for Clustering Operational Taxonomic Units Based on Homopolymer Compaction.
    Park S; Choi HS; Lee B; Chun J; Won JH; Yoon S
    IEEE/ACM Trans Comput Biol Bioinform; 2018; 15(2):441-451. PubMed ID: 26930691
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Distribution-based clustering: using ecology to refine the operational taxonomic unit.
    Preheim SP; Perrotta AR; Martin-Platero AM; Gupta A; Alm EJ
    Appl Environ Microbiol; 2013 Nov; 79(21):6593-603. PubMed ID: 23974136
    [TBL] [Abstract][Full Text] [Related]  

  • 9. OTUX: V-region specific OTU database for improved 16S rRNA OTU picking and efficient cross-study taxonomic comparison of microbiomes.
    Yadav D; Dutta A; Mande SS
    DNA Res; 2019 Apr; 26(2):147-156. PubMed ID: 30624596
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Improved OTU-picking using long-read 16S rRNA gene amplicon sequencing and generic hierarchical clustering.
    Franzén O; Hu J; Bao X; Itzkowitz SH; Peter I; Bashir A
    Microbiome; 2015 Oct; 3():43. PubMed ID: 26434730
    [TBL] [Abstract][Full Text] [Related]  

  • 11. DMclust, a Density-based Modularity Method for Accurate OTU Picking of 16S rRNA Sequences.
    Wei ZG; Zhang SW; Zhang YZ
    Mol Inform; 2017 Dec; 36(12):. PubMed ID: 28586119
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Machine learning classification by fitting amplicon sequences to existing OTUs.
    Armour CR; Sovacool KL; Close WL; Topçuoğlu BD; Wiens J; Schloss PD
    mSphere; 2023 Oct; 8(5):e0033623. PubMed ID: 37615431
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Ironing out the wrinkles in the rare biosphere through improved OTU clustering.
    Huse SM; Welch DM; Morrison HG; Sogin ML
    Environ Microbiol; 2010 Jul; 12(7):1889-98. PubMed ID: 20236171
    [TBL] [Abstract][Full Text] [Related]  

  • 14. OptiClust, an Improved Method for Assigning Amplicon-Based Sequence Data to Operational Taxonomic Units.
    Westcott SL; Schloss PD
    mSphere; 2017; 2(2):. PubMed ID: 28289728
    [TBL] [Abstract][Full Text] [Related]  

  • 15. TaxAss: Leveraging a Custom Freshwater Database Achieves Fine-Scale Taxonomic Resolution.
    Rohwer RR; Hamilton JJ; Newton RJ; McMahon KD
    mSphere; 2018 Sep; 3(5):. PubMed ID: 30185512
    [TBL] [Abstract][Full Text] [Related]  

  • 16. HmmUFOtu: An HMM and phylogenetic placement based ultra-fast taxonomic assignment and OTU picking tool for microbiome amplicon sequencing studies.
    Zheng Q; Bartow-McKenney C; Meisel JS; Grice EA
    Genome Biol; 2018 Jun; 19(1):82. PubMed ID: 29950165
    [TBL] [Abstract][Full Text] [Related]  

  • 17. LotuS: an efficient and user-friendly OTU processing pipeline.
    Hildebrand F; Tadeo R; Voigt AY; Bork P; Raes J
    Microbiome; 2014 Sep; 2(1):30. PubMed ID: 27367037
    [TBL] [Abstract][Full Text] [Related]  

  • 18. MSClust: A Multi-Seeds based Clustering algorithm for microbiome profiling using 16S rRNA sequence.
    Chen W; Cheng Y; Zhang C; Zhang S; Zhao H
    J Microbiol Methods; 2013 Sep; 94(3):347-55. PubMed ID: 23899776
    [TBL] [Abstract][Full Text] [Related]  

  • 19. bioOTU: An Improved Method for Simultaneous Taxonomic Assignments and Operational Taxonomic Units Clustering of 16s rRNA Gene Sequences.
    Chen SY; Deng F; Huang Y; Jia X; Liu YP; Lai SJ
    J Comput Biol; 2016 Apr; 23(4):229-38. PubMed ID: 26950196
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Clustering 16S rRNA for OTU prediction: a method of unsupervised Bayesian clustering.
    Hao X; Jiang R; Chen T
    Bioinformatics; 2011 Mar; 27(5):611-8. PubMed ID: 21233169
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 28.