227 related articles for article (PubMed ID: 21428956)
1. Identification of novel ligands for thiamine pyrophosphate (TPP) riboswitches.
Cressina E; Chen L; Moulin M; Leeper FJ; Abell C; Smith AG
Biochem Soc Trans; 2011 Apr; 39(2):652-7. PubMed ID: 21428956
[TBL] [Abstract][Full Text] [Related]
2. Thiamine pyrophosphate riboswitches are targets for the antimicrobial compound pyrithiamine.
Sudarsan N; Cohen-Chalamish S; Nakamura S; Emilsson GM; Breaker RR
Chem Biol; 2005 Dec; 12(12):1325-35. PubMed ID: 16356850
[TBL] [Abstract][Full Text] [Related]
3. Structure of the eukaryotic thiamine pyrophosphate riboswitch with its regulatory ligand.
Thore S; Leibundgut M; Ban N
Science; 2006 May; 312(5777):1208-11. PubMed ID: 16675665
[TBL] [Abstract][Full Text] [Related]
4. Structural basis for gene regulation by a thiamine pyrophosphate-sensing riboswitch.
Serganov A; Polonskaia A; Phan AT; Breaker RR; Patel DJ
Nature; 2006 Jun; 441(7097):1167-71. PubMed ID: 16728979
[TBL] [Abstract][Full Text] [Related]
5. Structural basis of thiamine pyrophosphate analogues binding to the eukaryotic riboswitch.
Thore S; Frick C; Ban N
J Am Chem Soc; 2008 Jul; 130(26):8116-7. PubMed ID: 18533652
[TBL] [Abstract][Full Text] [Related]
6. The THI-box riboswitch, or how RNA binds thiamin pyrophosphate.
Miranda-Ríos J
Structure; 2007 Mar; 15(3):259-65. PubMed ID: 17355861
[TBL] [Abstract][Full Text] [Related]
7. Conformational changes in the expression domain of the Escherichia coli thiM riboswitch.
Rentmeister A; Mayer G; Kuhn N; Famulok M
Nucleic Acids Res; 2007; 35(11):3713-22. PubMed ID: 17517779
[TBL] [Abstract][Full Text] [Related]
8. Exploring the structure, function of thiamine pyrophosphate riboswitch, and designing small molecules for antibacterial activity.
Wakchaure PD; Ganguly B
Wiley Interdiscip Rev RNA; 2023; 14(4):e1774. PubMed ID: 36594112
[TBL] [Abstract][Full Text] [Related]
9. Phosphate-group recognition by the aptamer domain of the thiamine pyrophosphate sensing riboswitch.
Noeske J; Richter C; Stirnal E; Schwalbe H; Wöhnert J
Chembiochem; 2006 Sep; 7(9):1451-6. PubMed ID: 16871614
[TBL] [Abstract][Full Text] [Related]
10. Switching the light on plant riboswitches.
Bocobza SE; Aharoni A
Trends Plant Sci; 2008 Oct; 13(10):526-33. PubMed ID: 18778966
[TBL] [Abstract][Full Text] [Related]
11. Crystal structures of the thi-box riboswitch bound to thiamine pyrophosphate analogs reveal adaptive RNA-small molecule recognition.
Edwards TE; Ferré-D'Amaré AR
Structure; 2006 Sep; 14(9):1459-68. PubMed ID: 16962976
[TBL] [Abstract][Full Text] [Related]
12. Crystallographic analysis of TPP riboswitch binding by small-molecule ligands discovered through fragment-based drug discovery approaches.
Warner KD; Ferré-D'Amaré AR
Methods Enzymol; 2014; 549():221-33. PubMed ID: 25432751
[TBL] [Abstract][Full Text] [Related]
13. Molecular level insights into the inhibition of gene expression by thiamine pyrophosphate (TPP) analogs for TPP riboswitch: A well-tempered metadynamics simulations study.
Wakchaure PD; Ganguly B
J Mol Graph Model; 2021 May; 104():107849. PubMed ID: 33545607
[TBL] [Abstract][Full Text] [Related]
14. Riboswitches: small-molecule recognition by gene regulatory RNAs.
Edwards TE; Klein DJ; Ferré-D'Amaré AR
Curr Opin Struct Biol; 2007 Jun; 17(3):273-9. PubMed ID: 17574837
[TBL] [Abstract][Full Text] [Related]
15. Ligand-induced folding of the thiM TPP riboswitch investigated by a structure-based fluorescence spectroscopic approach.
Lang K; Rieder R; Micura R
Nucleic Acids Res; 2007; 35(16):5370-8. PubMed ID: 17693433
[TBL] [Abstract][Full Text] [Related]
16. Enzymatic probing analysis of an engineered riboswitch reveals multiple off conformations.
Muranaka N; Sharma V; Yokobayashi Y
Nucleosides Nucleotides Nucleic Acids; 2011 Sep; 30(9):696-705. PubMed ID: 21902472
[TBL] [Abstract][Full Text] [Related]
17. Roles of Mg2+ in TPP-dependent riboswitch.
Yamauchi T; Miyoshi D; Kubodera T; Nishimura A; Nakai S; Sugimoto N
FEBS Lett; 2005 May; 579(12):2583-8. PubMed ID: 15862294
[TBL] [Abstract][Full Text] [Related]
18. Crystal structure of Escherichia coli thiamine pyrophosphate-sensing riboswitch in the apo state.
Lee HK; Lee YT; Fan L; Wilt HM; Conrad CE; Yu P; Zhang J; Shi G; Ji X; Wang YX; Stagno JR
Structure; 2023 Jul; 31(7):848-859.e3. PubMed ID: 37253356
[TBL] [Abstract][Full Text] [Related]
19. Secondary structures and functional requirements for thiM riboswitches from Desulfovibrio vulgaris, Erwinia carotovora and Rhodobacter spheroides.
Rentmeister A; Mayer G; Kuhn N; Famulok M
Biol Chem; 2008 Feb; 389(2):127-34. PubMed ID: 18163882
[TBL] [Abstract][Full Text] [Related]
20. Conformational Dynamics of thiM Riboswitch To Understand the Gene Regulation Mechanism Using Markov State Modeling and the Residual Fluctuation Network Approach.
Kesherwani M; N H V K; Velmurugan D
J Chem Inf Model; 2018 Aug; 58(8):1638-1651. PubMed ID: 29939019
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
