These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

179 related articles for article (PubMed ID: 21434641)

  • 1. CycloPs: generating virtual libraries of cyclized and constrained peptides including nonnatural amino acids.
    Duffy FJ; Verniere M; Devocelle M; Bernard E; Shields DC; Chubb AJ
    J Chem Inf Model; 2011 Apr; 51(4):829-36. PubMed ID: 21434641
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Computational approaches to developing short cyclic peptide modulators of protein-protein interactions.
    Duffy FJ; Devocelle M; Shields DC
    Methods Mol Biol; 2015; 1268():241-71. PubMed ID: 25555728
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A web-based platform for virtual screening.
    Watson P; Verdonk M; Hartshorn MJ
    J Mol Graph Model; 2003 Sep; 22(1):71-82. PubMed ID: 12798392
    [TBL] [Abstract][Full Text] [Related]  

  • 4. A gradient descent algorithm for minimizing amino acid coupling reactions when synthesizing cyclic-peptide libraries.
    Darwen PJ; Tran TT; Bourne GT; Nielson JL; Smythe ML
    Comb Chem High Throughput Screen; 2006 Aug; 9(7):559-63. PubMed ID: 16925515
    [TBL] [Abstract][Full Text] [Related]  

  • 5. A general method for designing combinatorial peptide libraries decodable by amino acid analysis.
    Kofoed J; Reymond JL
    J Comb Chem; 2007; 9(6):1046-52. PubMed ID: 17922554
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Four-base codon mediated mRNA display to construct peptide libraries that contain multiple nonnatural amino acids.
    Muranaka N; Hohsaka T; Sisido M
    Nucleic Acids Res; 2006 Jan; 34(1):e7. PubMed ID: 16397292
    [TBL] [Abstract][Full Text] [Related]  

  • 7. A convenient method for synthesis of cyclic peptide libraries.
    Bourne GT; Nielson JL; Coughlan JF; Darwen P; Campitelli MR; Horton DA; Rhümann A; Love SG; Tran TT; Smythe ML
    Methods Mol Biol; 2005; 298():151-65. PubMed ID: 16044546
    [TBL] [Abstract][Full Text] [Related]  

  • 8. SuperMimic--fitting peptide mimetics into protein structures.
    Goede A; Michalsky E; Schmidt U; Preissner R
    BMC Bioinformatics; 2006 Jan; 7():11. PubMed ID: 16403211
    [TBL] [Abstract][Full Text] [Related]  

  • 9. D-Peptide Builder: A Web Service to Enumerate, Analyze, and Visualize the Chemical Space of Combinatorial Peptide Libraries.
    Díaz-Eufracio BI; Palomino-Hernández O; Arredondo-Sánchez A; Medina-Franco JL
    Mol Inform; 2020 Nov; 39(11):e2000035. PubMed ID: 32558380
    [TBL] [Abstract][Full Text] [Related]  

  • 10. 3D-Epitope-Explorer (3DEX): localization of conformational epitopes within three-dimensional structures of proteins.
    Schreiber A; Humbert M; Benz A; Dietrich U
    J Comput Chem; 2005 Jul; 26(9):879-87. PubMed ID: 15834923
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Bottom-Up Design Approach for OBOC Peptide Libraries.
    Kalafatovic D; Mauša G; Rešetar Maslov D; Giralt E
    Molecules; 2020 Jul; 25(15):. PubMed ID: 32707811
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Reverse and Random Decoy Methods for False Discovery Rate Estimation in High Mass Accuracy Peptide Spectral Library Searches.
    Zhang Z; Burke M; Mirokhin YA; Tchekhovskoi DV; Markey SP; Yu W; Chaerkady R; Hess S; Stein SE
    J Proteome Res; 2018 Feb; 17(2):846-857. PubMed ID: 29281288
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Past and future perspectives of synthetic peptide libraries.
    Marasco D; Perretta G; Sabatella M; Ruvo M
    Curr Protein Pept Sci; 2008 Oct; 9(5):447-67. PubMed ID: 18855697
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Forcefield_NCAA: ab initio charge parameters to aid in the discovery and design of therapeutic proteins and peptides with unnatural amino acids and their application to complement inhibitors of the compstatin family.
    Khoury GA; Smadbeck J; Tamamis P; Vandris AC; Kieslich CA; Floudas CA
    ACS Synth Biol; 2014 Dec; 3(12):855-69. PubMed ID: 24932669
    [TBL] [Abstract][Full Text] [Related]  

  • 15. In Vitro Selection of Macrocyclic α/β
    Wakabayashi R; Kawai M; Katoh T; Suga H
    J Am Chem Soc; 2022 Oct; 144(40):18504-18510. PubMed ID: 36173923
    [TBL] [Abstract][Full Text] [Related]  

  • 16. ZINC--a free database of commercially available compounds for virtual screening.
    Irwin JJ; Shoichet BK
    J Chem Inf Model; 2005; 45(1):177-82. PubMed ID: 15667143
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Computational Opportunities and Challenges in Finding Cyclic Peptide Modulators of Protein-Protein Interactions.
    Duffy F; Maheshwari N; Buchete NV; Shields D
    Methods Mol Biol; 2019; 2001():73-95. PubMed ID: 31134568
    [TBL] [Abstract][Full Text] [Related]  

  • 18. PICKAPEP: An application for parameter calculation and visualization of cyclized and modified peptidomimetics.
    Erckes V; Hilleke M; Isert C; Steuer C
    J Pept Sci; 2024 Dec; 30(12):e3646. PubMed ID: 39085168
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Accurate de novo design of hyperstable constrained peptides.
    Bhardwaj G; Mulligan VK; Bahl CD; Gilmore JM; Harvey PJ; Cheneval O; Buchko GW; Pulavarti SV; Kaas Q; Eletsky A; Huang PS; Johnsen WA; Greisen PJ; Rocklin GJ; Song Y; Linsky TW; Watkins A; Rettie SA; Xu X; Carter LP; Bonneau R; Olson JM; Coutsias E; Correnti CE; Szyperski T; Craik DJ; Baker D
    Nature; 2016 Oct; 538(7625):329-335. PubMed ID: 27626386
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Phage Selection of Cyclic Peptides for Application in Research and Drug Development.
    Deyle K; Kong XD; Heinis C
    Acc Chem Res; 2017 Aug; 50(8):1866-1874. PubMed ID: 28719188
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.