These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

142 related articles for article (PubMed ID: 21453517)

  • 1. A vertebrate case study of the quality of assemblies derived from next-generation sequences.
    Ye L; Hillier LW; Minx P; Thane N; Locke DP; Martin JC; Chen L; Mitreva M; Miller JR; Haub KV; Dooling DJ; Mardis ER; Wilson RK; Weinstock GM; Warren WC
    Genome Biol; 2011; 12(3):R31. PubMed ID: 21453517
    [TBL] [Abstract][Full Text] [Related]  

  • 2. SIMBA: a web tool for managing bacterial genome assembly generated by Ion PGM sequencing technology.
    Mariano DC; Pereira FL; Aguiar EL; Oliveira LC; Benevides L; Guimarães LC; Folador EL; Sousa TJ; Ghosh P; Barh D; Figueiredo HC; Silva A; Ramos RT; Azevedo VA
    BMC Bioinformatics; 2016 Dec; 17(Suppl 18):456. PubMed ID: 28105921
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Graph accordance of next-generation sequence assemblies.
    Yao G; Ye L; Gao H; Minx P; Warren WC; Weinstock GM
    Bioinformatics; 2012 Jan; 28(1):13-6. PubMed ID: 22025481
    [TBL] [Abstract][Full Text] [Related]  

  • 4. ClinQC: a tool for quality control and cleaning of Sanger and NGS data in clinical research.
    Pandey RV; Pabinger S; Kriegner A; Weinhäusel A
    BMC Bioinformatics; 2016 Feb; 17():56. PubMed ID: 26830926
    [TBL] [Abstract][Full Text] [Related]  

  • 5. How complete are "complete" genome assemblies?-An avian perspective.
    Peona V; Weissensteiner MH; Suh A
    Mol Ecol Resour; 2018 Nov; 18(6):1188-1195. PubMed ID: 30035372
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Tablet: Visualizing Next-Generation Sequence Assemblies and Mappings.
    Milne I; Bayer M; Stephen G; Cardle L; Marshall D
    Methods Mol Biol; 2016; 1374():253-68. PubMed ID: 26519411
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Low-Cost, High-Throughput Sequencing of DNA Assemblies Using a Highly Multiplexed Nextera Process.
    Shapland EB; Holmes V; Reeves CD; Sorokin E; Durot M; Platt D; Allen C; Dean J; Serber Z; Newman J; Chandran S
    ACS Synth Biol; 2015 Jul; 4(7):860-6. PubMed ID: 25913499
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Single-Molecule Real-Time Sequencing Combined with Optical Mapping Yields Completely Finished Fungal Genome.
    Faino L; Seidl MF; Datema E; van den Berg GC; Janssen A; Wittenberg AH; Thomma BP
    mBio; 2015 Aug; 6(4):. PubMed ID: 26286689
    [TBL] [Abstract][Full Text] [Related]  

  • 9. SRAssembler: Selective Recursive local Assembly of homologous genomic regions.
    McCarthy TW; Chou HC; Brendel VP
    BMC Bioinformatics; 2019 Jul; 20(1):371. PubMed ID: 31266441
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Unexpected effects of different genetic backgrounds on identification of genomic rearrangements via whole-genome next generation sequencing.
    Chen Z; Gowan K; Leach SM; Viboolsittiseri SS; Mishra AK; Kadoishi T; Diener K; Gao B; Jones K; Wang JH
    BMC Genomics; 2016 Oct; 17(1):823. PubMed ID: 27769169
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Reference-free transcriptome assembly in non-model animals from next-generation sequencing data.
    Cahais V; Gayral P; Tsagkogeorga G; Melo-Ferreira J; Ballenghien M; Weinert L; Chiari Y; Belkhir K; Ranwez V; Galtier N
    Mol Ecol Resour; 2012 Sep; 12(5):834-45. PubMed ID: 22540679
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Optimizing hybrid assembly of next-generation sequence data from Enterococcus faecium: a microbe with highly divergent genome.
    Wang Y; Yu Y; Pan B; Hao P; Li Y; Shao Z; Xu X; Li X
    BMC Syst Biol; 2012; 6 Suppl 3(Suppl 3):S21. PubMed ID: 23282199
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Next-generation sequencing and large genome assemblies.
    Henson J; Tischler G; Ning Z
    Pharmacogenomics; 2012 Jun; 13(8):901-15. PubMed ID: 22676195
    [TBL] [Abstract][Full Text] [Related]  

  • 14. De novo assembly of the pepper transcriptome (Capsicum annuum): a benchmark for in silico discovery of SNPs, SSRs and candidate genes.
    Ashrafi H; Hill T; Stoffel K; Kozik A; Yao J; Chin-Wo SR; Van Deynze A
    BMC Genomics; 2012 Oct; 13():571. PubMed ID: 23110314
    [TBL] [Abstract][Full Text] [Related]  

  • 15. From Short Reads to Chromosome-Scale Genome Assemblies.
    Fletcher K; Michelmore R
    Methods Mol Biol; 2018; 1848():151-197. PubMed ID: 30182236
    [TBL] [Abstract][Full Text] [Related]  

  • 16. NGS-QC Generator: A Quality Control System for ChIP-Seq and Related Deep Sequencing-Generated Datasets.
    Mendoza-Parra MA; Saleem MA; Blum M; Cholley PE; Gronemeyer H
    Methods Mol Biol; 2016; 1418():243-65. PubMed ID: 27008019
    [TBL] [Abstract][Full Text] [Related]  

  • 17. KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies.
    Mapleson D; Garcia Accinelli G; Kettleborough G; Wright J; Clavijo BJ
    Bioinformatics; 2017 Feb; 33(4):574-576. PubMed ID: 27797770
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Optimization of de novo transcriptome assembly from high-throughput short read sequencing data improves functional annotation for non-model organisms.
    Haznedaroglu BZ; Reeves D; Rismani-Yazdi H; Peccia J
    BMC Bioinformatics; 2012 Jul; 13():170. PubMed ID: 22808927
    [TBL] [Abstract][Full Text] [Related]  

  • 19. CSA: A high-throughput chromosome-scale assembly pipeline for vertebrate genomes.
    Kuhl H; Li L; Wuertz S; Stöck M; Liang XF; Klopp C
    Gigascience; 2020 May; 9(5):. PubMed ID: 32449778
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Application of next-generation sequencing for the identification of herbal products.
    Lo YT; Shaw PC
    Biotechnol Adv; 2019 Dec; 37(8):107450. PubMed ID: 31521786
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.