These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

229 related articles for article (PubMed ID: 21465564)

  • 21. Comparative protein structure modeling by combining multiple templates and optimizing sequence-to-structure alignments.
    Fernandez-Fuentes N; Rai BK; Madrid-Aliste CJ; Fajardo JE; Fiser A
    Bioinformatics; 2007 Oct; 23(19):2558-65. PubMed ID: 17823132
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Benchmarking of TASSER_2.0: an improved protein structure prediction algorithm with more accurate predicted contact restraints.
    Lee SY; Skolnick J
    Biophys J; 2008 Aug; 95(4):1956-64. PubMed ID: 18487301
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Protein structure prediction using deep learning distance and hydrogen-bonding restraints in CASP14.
    Zheng W; Li Y; Zhang C; Zhou X; Pearce R; Bell EW; Huang X; Zhang Y
    Proteins; 2021 Dec; 89(12):1734-1751. PubMed ID: 34331351
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Detecting distant-homology protein structures by aligning deep neural-network based contact maps.
    Zheng W; Wuyun Q; Li Y; Mortuza SM; Zhang C; Pearce R; Ruan J; Zhang Y
    PLoS Comput Biol; 2019 Oct; 15(10):e1007411. PubMed ID: 31622328
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Improved scoring function for comparative modeling using the M4T method.
    Rykunov D; Steinberger E; Madrid-Aliste CJ; Fiser A
    J Struct Funct Genomics; 2009 Mar; 10(1):95-9. PubMed ID: 18985440
    [TBL] [Abstract][Full Text] [Related]  

  • 26. MUSTER: Improving protein sequence profile-profile alignments by using multiple sources of structure information.
    Wu S; Zhang Y
    Proteins; 2008 Aug; 72(2):547-56. PubMed ID: 18247410
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Protein threading using context-specific alignment potential.
    Ma J; Wang S; Zhao F; Xu J
    Bioinformatics; 2013 Jul; 29(13):i257-65. PubMed ID: 23812991
    [TBL] [Abstract][Full Text] [Related]  

  • 28. mTM-align: an algorithm for fast and accurate multiple protein structure alignment.
    Dong R; Peng Z; Zhang Y; Yang J
    Bioinformatics; 2018 May; 34(10):1719-1725. PubMed ID: 29281009
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Protein structure prediction by threading. Why it works and why it does not.
    Mirny LA; Shakhnovich EI
    J Mol Biol; 1998 Oct; 283(2):507-26. PubMed ID: 9769221
    [TBL] [Abstract][Full Text] [Related]  

  • 30. BioShell-Threading: versatile Monte Carlo package for protein 3D threading.
    Gniewek P; Kolinski A; Kloczkowski A; Gront D
    BMC Bioinformatics; 2014 Jan; 15():22. PubMed ID: 24444459
    [TBL] [Abstract][Full Text] [Related]  

  • 31. eThread: a highly optimized machine learning-based approach to meta-threading and the modeling of protein tertiary structures.
    Brylinski M; Lingam D
    PLoS One; 2012; 7(11):e50200. PubMed ID: 23185577
    [TBL] [Abstract][Full Text] [Related]  

  • 32. T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension.
    Di Tommaso P; Moretti S; Xenarios I; Orobitg M; Montanyola A; Chang JM; Taly JF; Notredame C
    Nucleic Acids Res; 2011 Jul; 39(Web Server issue):W13-7. PubMed ID: 21558174
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Systematic analysis of the effect of multiple templates on the accuracy of comparative models of protein structure.
    Chakravarty S; Godbole S; Zhang B; Berger S; Sanchez R
    BMC Struct Biol; 2008 Jul; 8():31. PubMed ID: 18631402
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Deep template-based protein structure prediction.
    Wu F; Xu J
    PLoS Comput Biol; 2021 May; 17(5):e1008954. PubMed ID: 33939695
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Template-based and free modeling of I-TASSER and QUARK pipelines using predicted contact maps in CASP12.
    Zhang C; Mortuza SM; He B; Wang Y; Zhang Y
    Proteins; 2018 Mar; 86 Suppl 1(Suppl 1):136-151. PubMed ID: 29082551
    [TBL] [Abstract][Full Text] [Related]  

  • 36. GalaxyTBM: template-based modeling by building a reliable core and refining unreliable local regions.
    Ko J; Park H; Seok C
    BMC Bioinformatics; 2012 Aug; 13():198. PubMed ID: 22883815
    [TBL] [Abstract][Full Text] [Related]  

  • 37. ThreaDom: extracting protein domain boundary information from multiple threading alignments.
    Xue Z; Xu D; Wang Y; Zhang Y
    Bioinformatics; 2013 Jul; 29(13):i247-56. PubMed ID: 23812990
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Estimating quality of template-based protein models by alignment stability.
    Chen H; Kihara D
    Proteins; 2008 May; 71(3):1255-74. PubMed ID: 18041762
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Increased detection of structural templates using alignments of designed sequences.
    Larson SM; Garg A; Desjarlais JR; Pande VS
    Proteins; 2003 May; 51(3):390-6. PubMed ID: 12696050
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Refined template selection and combination algorithm significantly improves template-based modeling accuracy.
    Runthala A; Chowdhury S
    J Bioinform Comput Biol; 2019 Apr; 17(2):1950006. PubMed ID: 31057073
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 12.