260 related articles for article (PubMed ID: 21467267)
1. Comprehensive long-span paired-end-tag mapping reveals characteristic patterns of structural variations in epithelial cancer genomes.
Hillmer AM; Yao F; Inaki K; Lee WH; Ariyaratne PN; Teo AS; Woo XY; Zhang Z; Zhao H; Ukil L; Chen JP; Zhu F; So JB; Salto-Tellez M; Poh WT; Zawack KF; Nagarajan N; Gao S; Li G; Kumar V; Lim HP; Sia YY; Chan CS; Leong ST; Neo SC; Choi PS; Thoreau H; Tan PB; Shahab A; Ruan X; Bergh J; Hall P; Cacheux-Rataboul V; Wei CL; Yeoh KG; Sung WK; Bourque G; Liu ET; Ruan Y
Genome Res; 2011 May; 21(5):665-75. PubMed ID: 21467267
[TBL] [Abstract][Full Text] [Related]
2. Long span DNA paired-end-tag (DNA-PET) sequencing strategy for the interrogation of genomic structural mutations and fusion-point-guided reconstruction of amplicons.
Yao F; Ariyaratne PN; Hillmer AM; Lee WH; Li G; Teo AS; Woo XY; Zhang Z; Chen JP; Poh WT; Zawack KF; Chan CS; Leong ST; Neo SC; Choi PS; Gao S; Nagarajan N; Thoreau H; Shahab A; Ruan X; Cacheux-Rataboul V; Wei CL; Bourque G; Sung WK; Liu ET; Ruan Y
PLoS One; 2012; 7(9):e46152. PubMed ID: 23029419
[TBL] [Abstract][Full Text] [Related]
3. Ulysses: accurate detection of low-frequency structural variations in large insert-size sequencing libraries.
Gillet-Markowska A; Richard H; Fischer G; Lafontaine I
Bioinformatics; 2015 Mar; 31(6):801-8. PubMed ID: 25380961
[TBL] [Abstract][Full Text] [Related]
4. Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing.
Campbell PJ; Stephens PJ; Pleasance ED; O'Meara S; Li H; Santarius T; Stebbings LA; Leroy C; Edkins S; Hardy C; Teague JW; Menzies A; Goodhead I; Turner DJ; Clee CM; Quail MA; Cox A; Brown C; Durbin R; Hurles ME; Edwards PA; Bignell GR; Stratton MR; Futreal PA
Nat Genet; 2008 Jun; 40(6):722-9. PubMed ID: 18438408
[TBL] [Abstract][Full Text] [Related]
5. Whole-genome sequencing with long reads reveals complex structure and origin of structural variation in human genetic variations and somatic mutations in cancer.
Fujimoto A; Wong JH; Yoshii Y; Akiyama S; Tanaka A; Yagi H; Shigemizu D; Nakagawa H; Mizokami M; Shimada M
Genome Med; 2021 Apr; 13(1):65. PubMed ID: 33910608
[TBL] [Abstract][Full Text] [Related]
6. Next generation mapping reveals novel large genomic rearrangements in prostate cancer.
Jaratlerdsiri W; Chan EKF; Petersen DC; Yang C; Croucher PI; Bornman MSR; Sheth P; Hayes VM
Oncotarget; 2017 Apr; 8(14):23588-23602. PubMed ID: 28423598
[TBL] [Abstract][Full Text] [Related]
7. Structural variation in the chicken genome identified by paired-end next-generation DNA sequencing of reduced representation libraries.
Kerstens HH; Crooijmans RP; Dibbits BW; Vereijken A; Okimoto R; Groenen MA
BMC Genomics; 2011 Feb; 12():94. PubMed ID: 21291514
[TBL] [Abstract][Full Text] [Related]
8. Paired-end mapping reveals extensive structural variation in the human genome.
Korbel JO; Urban AE; Affourtit JP; Godwin B; Grubert F; Simons JF; Kim PM; Palejev D; Carriero NJ; Du L; Taillon BE; Chen Z; Tanzer A; Saunders AC; Chi J; Yang F; Carter NP; Hurles ME; Weissman SM; Harkins TT; Gerstein MB; Egholm M; Snyder M
Science; 2007 Oct; 318(5849):420-6. PubMed ID: 17901297
[TBL] [Abstract][Full Text] [Related]
9. Complex landscapes of somatic rearrangement in human breast cancer genomes.
Stephens PJ; McBride DJ; Lin ML; Varela I; Pleasance ED; Simpson JT; Stebbings LA; Leroy C; Edkins S; Mudie LJ; Greenman CD; Jia M; Latimer C; Teague JW; Lau KW; Burton J; Quail MA; Swerdlow H; Churcher C; Natrajan R; Sieuwerts AM; Martens JW; Silver DP; Langerød A; Russnes HE; Foekens JA; Reis-Filho JS; van 't Veer L; Richardson AL; Børresen-Dale AL; Campbell PJ; Futreal PA; Stratton MR
Nature; 2009 Dec; 462(7276):1005-10. PubMed ID: 20033038
[TBL] [Abstract][Full Text] [Related]
10. High-throughput long paired-end sequencing of a Fosmid library by PacBio.
Dai Z; Li T; Li J; Han Z; Pan Y; Tang S; Diao X; Luo M
Plant Methods; 2019; 15():142. PubMed ID: 31788019
[TBL] [Abstract][Full Text] [Related]
11. Amplification and thrifty single-molecule sequencing of recurrent somatic structural variations.
Patel A; Schwab R; Liu YT; Bafna V
Genome Res; 2014 Feb; 24(2):318-28. PubMed ID: 24307551
[TBL] [Abstract][Full Text] [Related]
12. Global analysis of somatic structural genomic alterations and their impact on gene expression in diverse human cancers.
Alaei-Mahabadi B; Bhadury J; Karlsson JW; Nilsson JA; Larsson E
Proc Natl Acad Sci U S A; 2016 Nov; 113(48):13768-13773. PubMed ID: 27856756
[TBL] [Abstract][Full Text] [Related]
13. Genome maps across 26 human populations reveal population-specific patterns of structural variation.
Levy-Sakin M; Pastor S; Mostovoy Y; Li L; Leung AKY; McCaffrey J; Young E; Lam ET; Hastie AR; Wong KHY; Chung CYL; Ma W; Sibert J; Rajagopalan R; Jin N; Chow EYC; Chu C; Poon A; Lin C; Naguib A; Wang WP; Cao H; Chan TF; Yip KY; Xiao M; Kwok PY
Nat Commun; 2019 Mar; 10(1):1025. PubMed ID: 30833565
[TBL] [Abstract][Full Text] [Related]
14. Evaluation of paired-end sequencing strategies for detection of genome rearrangements in cancer.
Bashir A; Volik S; Collins C; Bafna V; Raphael BJ
PLoS Comput Biol; 2008 Apr; 4(4):e1000051. PubMed ID: 18404202
[TBL] [Abstract][Full Text] [Related]
15. PeSV-Fisher: identification of somatic and non-somatic structural variants using next generation sequencing data.
Escaramís G; Tornador C; Bassaganyas L; Rabionet R; Tubio JM; Martínez-Fundichely A; Cáceres M; Gut M; Ossowski S; Estivill X
PLoS One; 2013; 8(5):e63377. PubMed ID: 23704902
[TBL] [Abstract][Full Text] [Related]
16. Genome-wide mapping and assembly of structural variant breakpoints in the mouse genome.
Quinlan AR; Clark RA; Sokolova S; Leibowitz ML; Zhang Y; Hurles ME; Mell JC; Hall IM
Genome Res; 2010 May; 20(5):623-35. PubMed ID: 20308636
[TBL] [Abstract][Full Text] [Related]
17. DELLY: structural variant discovery by integrated paired-end and split-read analysis.
Rausch T; Zichner T; Schlattl A; Stütz AM; Benes V; Korbel JO
Bioinformatics; 2012 Sep; 28(18):i333-i339. PubMed ID: 22962449
[TBL] [Abstract][Full Text] [Related]
18. Single-cell analysis of structural variations and complex rearrangements with tri-channel processing.
Sanders AD; Meiers S; Ghareghani M; Porubsky D; Jeong H; van Vliet MACC; Rausch T; Richter-Pechańska P; Kunz JB; Jenni S; Bolognini D; Longo GMC; Raeder B; Kinanen V; Zimmermann J; Benes V; Schrappe M; Mardin BR; Kulozik AE; Bornhauser B; Bourquin JP; Marschall T; Korbel JO
Nat Biotechnol; 2020 Mar; 38(3):343-354. PubMed ID: 31873213
[TBL] [Abstract][Full Text] [Related]
19. Geographic distribution and adaptive significance of genomic structural variants: an anthropological genetics perspective.
Eaaswarkhanth M; Pavlidis P; Gokcumen O
Hum Biol; 2014; 86(4):260-75. PubMed ID: 25959693
[TBL] [Abstract][Full Text] [Related]
20. Disruption of chromatin folding domains by somatic genomic rearrangements in human cancer.
Akdemir KC; Le VT; Chandran S; Li Y; Verhaak RG; Beroukhim R; Campbell PJ; Chin L; Dixon JR; Futreal PA; ;
Nat Genet; 2020 Mar; 52(3):294-305. PubMed ID: 32024999
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
