285 related articles for article (PubMed ID: 21483480)
1. Reconciliation of genome-scale metabolic reconstructions for comparative systems analysis.
Oberhardt MA; Puchałka J; Martins dos Santos VA; Papin JA
PLoS Comput Biol; 2011 Mar; 7(3):e1001116. PubMed ID: 21483480
[TBL] [Abstract][Full Text] [Related]
2. A genome-scale metabolic reconstruction of Pseudomonas putida KT2440: iJN746 as a cell factory.
Nogales J; Palsson BØ; Thiele I
BMC Syst Biol; 2008 Sep; 2():79. PubMed ID: 18793442
[TBL] [Abstract][Full Text] [Related]
3. Automated generation of genome-scale metabolic draft reconstructions based on KEGG.
Karlsen E; Schulz C; Almaas E
BMC Bioinformatics; 2018 Dec; 19(1):467. PubMed ID: 30514205
[TBL] [Abstract][Full Text] [Related]
4. Reconciliation of metabolites and biochemical reactions for metabolic networks.
Bernard T; Bridge A; Morgat A; Moretti S; Xenarios I; Pagni M
Brief Bioinform; 2014 Jan; 15(1):123-35. PubMed ID: 23172809
[TBL] [Abstract][Full Text] [Related]
5. Computing autocatalytic sets to unravel inconsistencies in metabolic network reconstructions.
Schmidt R; Waschina S; Boettger-Schmidt D; Kost C; Kaleta C
Bioinformatics; 2015 Feb; 31(3):373-81. PubMed ID: 25286919
[TBL] [Abstract][Full Text] [Related]
6. Genome-scale reconstruction and analysis of the Pseudomonas putida KT2440 metabolic network facilitates applications in biotechnology.
Puchałka J; Oberhardt MA; Godinho M; Bielecka A; Regenhardt D; Timmis KN; Papin JA; Martins dos Santos VA
PLoS Comput Biol; 2008 Oct; 4(10):e1000210. PubMed ID: 18974823
[TBL] [Abstract][Full Text] [Related]
7. Comparative analysis of metabolic networks provides insight into the evolution of plant pathogenic and nonpathogenic lifestyles in Pseudomonas.
Mithani A; Hein J; Preston GM
Mol Biol Evol; 2011 Jan; 28(1):483-99. PubMed ID: 20709733
[TBL] [Abstract][Full Text] [Related]
8. MultiMetEval: comparative and multi-objective analysis of genome-scale metabolic models.
Zakrzewski P; Medema MH; Gevorgyan A; Kierzek AM; Breitling R; Takano E
PLoS One; 2012; 7(12):e51511. PubMed ID: 23272111
[TBL] [Abstract][Full Text] [Related]
9. Reconciling high-throughput gene essentiality data with metabolic network reconstructions.
Blazier AS; Papin JA
PLoS Comput Biol; 2019 Apr; 15(4):e1006507. PubMed ID: 30973869
[TBL] [Abstract][Full Text] [Related]
10. High-quality genome-scale metabolic modelling of Pseudomonas putida highlights its broad metabolic capabilities.
Nogales J; Mueller J; Gudmundsson S; Canalejo FJ; Duque E; Monk J; Feist AM; Ramos JL; Niu W; Palsson BO
Environ Microbiol; 2020 Jan; 22(1):255-269. PubMed ID: 31657101
[TBL] [Abstract][Full Text] [Related]
11. ModelExplorer - software for visual inspection and inconsistency correction of genome-scale metabolic reconstructions.
Martyushenko N; Almaas E
BMC Bioinformatics; 2019 Jan; 20(1):56. PubMed ID: 30691403
[TBL] [Abstract][Full Text] [Related]
12. MetaMerge: scaling up genome-scale metabolic reconstructions with application to Mycobacterium tuberculosis.
Chindelevitch L; Stanley S; Hung D; Regev A; Berger B
Genome Biol; 2012 Jan; 13(1):r6. PubMed ID: 22292986
[TBL] [Abstract][Full Text] [Related]
13. Medusa: Software to build and analyze ensembles of genome-scale metabolic network reconstructions.
Medlock GL; Moutinho TJ; Papin JA
PLoS Comput Biol; 2020 Apr; 16(4):e1007847. PubMed ID: 32348298
[TBL] [Abstract][Full Text] [Related]
14. MrBac: a web server for draft metabolic network reconstructions for bacteria.
Liao YC; Chen JC; Tsai MH; Tang YH; Chen FC; Hsiung CA
Bioeng Bugs; 2011; 2(5):284-7. PubMed ID: 22008641
[TBL] [Abstract][Full Text] [Related]
15. Basic and applied uses of genome-scale metabolic network reconstructions of Escherichia coli.
McCloskey D; Palsson BØ; Feist AM
Mol Syst Biol; 2013; 9():661. PubMed ID: 23632383
[TBL] [Abstract][Full Text] [Related]
16. Applications of genome-scale metabolic reconstructions.
Oberhardt MA; Palsson BØ; Papin JA
Mol Syst Biol; 2009; 5():320. PubMed ID: 19888215
[TBL] [Abstract][Full Text] [Related]
17. A detailed genome-wide reconstruction of mouse metabolism based on human Recon 1.
Sigurdsson MI; Jamshidi N; Steingrimsson E; Thiele I; Palsson BØ
BMC Syst Biol; 2010 Oct; 4():140. PubMed ID: 20959003
[TBL] [Abstract][Full Text] [Related]
18. Pathway-Consensus Approach to Metabolic Network Reconstruction for Pseudomonas putida KT2440 by Systematic Comparison of Published Models.
Yuan Q; Huang T; Li P; Hao T; Li F; Ma H; Wang Z; Zhao X; Chen T; Goryanin I
PLoS One; 2017; 12(1):e0169437. PubMed ID: 28085902
[TBL] [Abstract][Full Text] [Related]
19. Integration of Comparative Genomics with Genome-Scale Metabolic Modeling to Investigate Strain-Specific Phenotypical Differences.
Monk J; Bosi E
Methods Mol Biol; 2018; 1716():151-175. PubMed ID: 29222753
[TBL] [Abstract][Full Text] [Related]
20. Identification of functional differences in metabolic networks using comparative genomics and constraint-based models.
Hamilton JJ; Reed JL
PLoS One; 2012; 7(4):e34670. PubMed ID: 22666308
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]