These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

123 related articles for article (PubMed ID: 21498398)

  • 1. OTUbase: an R infrastructure package for operational taxonomic unit data.
    Beck D; Settles M; Foster JA
    Bioinformatics; 2011 Jun; 27(12):1700-1. PubMed ID: 21498398
    [TBL] [Abstract][Full Text] [Related]  

  • 2. msa: an R package for multiple sequence alignment.
    Bodenhofer U; Bonatesta E; Horejš-Kainrath C; Hochreiter S
    Bioinformatics; 2015 Dec; 31(24):3997-9. PubMed ID: 26315911
    [TBL] [Abstract][Full Text] [Related]  

  • 3. ClassifyR: an R package for performance assessment of classification with applications to transcriptomics.
    Strbenac D; Mann GJ; Ormerod JT; Yang JY
    Bioinformatics; 2015 Jun; 31(11):1851-3. PubMed ID: 25644269
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Girafe--an R/Bioconductor package for functional exploration of aligned next-generation sequencing reads.
    Toedling J; Ciaudo C; Voinnet O; Heard E; Barillot E
    Bioinformatics; 2010 Nov; 26(22):2902-3. PubMed ID: 20861030
    [TBL] [Abstract][Full Text] [Related]  

  • 5. mAPKL: R/ Bioconductor package for detecting gene exemplars and revealing their characteristics.
    Sakellariou A; Spyrou G
    BMC Bioinformatics; 2015 Sep; 16(1):291. PubMed ID: 26374744
    [TBL] [Abstract][Full Text] [Related]  

  • 6. GUIDEseq: a bioconductor package to analyze GUIDE-Seq datasets for CRISPR-Cas nucleases.
    Zhu LJ; Lawrence M; Gupta A; Pagès H; Kucukural A; Garber M; Wolfe SA
    BMC Genomics; 2017 May; 18(1):379. PubMed ID: 28506212
    [TBL] [Abstract][Full Text] [Related]  

  • 7. ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization.
    Yu G; Wang LG; He QY
    Bioinformatics; 2015 Jul; 31(14):2382-3. PubMed ID: 25765347
    [TBL] [Abstract][Full Text] [Related]  

  • 8. ontoCAT: an R package for ontology traversal and search.
    Kurbatova N; Adamusiak T; Kurnosov P; Swertz MA; Kapushesky M
    Bioinformatics; 2011 Sep; 27(17):2468-70. PubMed ID: 21697126
    [TBL] [Abstract][Full Text] [Related]  

  • 9. DNAshapeR: an R/Bioconductor package for DNA shape prediction and feature encoding.
    Chiu TP; Comoglio F; Zhou T; Yang L; Paro R; Rohs R
    Bioinformatics; 2016 Apr; 32(8):1211-3. PubMed ID: 26668005
    [TBL] [Abstract][Full Text] [Related]  

  • 10. StructuralVariantAnnotation: a R/Bioconductor foundation for a caller-agnostic structural variant software ecosystem.
    Cameron DL; Dong R; Papenfuss AT
    Bioinformatics; 2022 Mar; 38(7):2046-2048. PubMed ID: 35134827
    [TBL] [Abstract][Full Text] [Related]  

  • 11. VariantAnnotation: a Bioconductor package for exploration and annotation of genetic variants.
    Obenchain V; Lawrence M; Carey V; Gogarten S; Shannon P; Morgan M
    Bioinformatics; 2014 Jul; 30(14):2076-8. PubMed ID: 24681907
    [TBL] [Abstract][Full Text] [Related]  

  • 12. mcaGUI: microbial community analysis R-Graphical User Interface (GUI).
    Copeland WK; Krishnan V; Beck D; Settles M; Foster JA; Cho KC; Day M; Hickey R; Schütte UM; Zhou X; Williams CJ; Forney LJ; Abdo Z
    Bioinformatics; 2012 Aug; 28(16):2198-9. PubMed ID: 22692220
    [TBL] [Abstract][Full Text] [Related]  

  • 13. CorMut: an R/Bioconductor package for computing correlated mutations based on selection pressure.
    Li Z; Huang Y; Ouyang Y; Jiao Y; Xing H; Liao L; Jiang S; Shao Y; Ma L
    Bioinformatics; 2014 Jul; 30(14):2073-5. PubMed ID: 24681904
    [TBL] [Abstract][Full Text] [Related]  

  • 14. easyRNASeq: a bioconductor package for processing RNA-Seq data.
    Delhomme N; Padioleau I; Furlong EE; Steinmetz LM
    Bioinformatics; 2012 Oct; 28(19):2532-3. PubMed ID: 22847932
    [TBL] [Abstract][Full Text] [Related]  

  • 15. compcodeR--an R package for benchmarking differential expression methods for RNA-seq data.
    Soneson C
    Bioinformatics; 2014 Sep; 30(17):2517-8. PubMed ID: 24813215
    [TBL] [Abstract][Full Text] [Related]  

  • 16. oneChannelGUI: a graphical interface to Bioconductor tools, designed for life scientists who are not familiar with R language.
    Sanges R; Cordero F; Calogero RA
    Bioinformatics; 2007 Dec; 23(24):3406-8. PubMed ID: 17875544
    [TBL] [Abstract][Full Text] [Related]  

  • 17. OmicCircos: A Simple-to-Use R Package for the Circular Visualization of Multidimensional Omics Data.
    Hu Y; Yan C; Hsu CH; Chen QR; Niu K; Komatsoulis GA; Meerzaman D
    Cancer Inform; 2014; 13():13-20. PubMed ID: 24526832
    [TBL] [Abstract][Full Text] [Related]  

  • 18. rTANDEM, an R/Bioconductor package for MS/MS protein identification.
    Fournier F; Joly Beauparlant C; Paradis R; Droit A
    Bioinformatics; 2014 Aug; 30(15):2233-4. PubMed ID: 24700319
    [TBL] [Abstract][Full Text] [Related]  

  • 19. flowFit: a Bioconductor package to estimate proliferation in cell-tracking dye studies.
    Rambaldi D; Pece S; Di Fiore PP
    Bioinformatics; 2014 Jul; 30(14):2060-5. PubMed ID: 24681909
    [TBL] [Abstract][Full Text] [Related]  

  • 20. HilbertCurve: an R/Bioconductor package for high-resolution visualization of genomic data.
    Gu Z; Eils R; Schlesner M
    Bioinformatics; 2016 Aug; 32(15):2372-4. PubMed ID: 27153599
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.