198 related articles for article (PubMed ID: 21504738)
1. A multiscale dynamic model of DNA supercoil relaxation by topoisomerase IB.
Lillian TD; Taranova M; Wereszczynski J; Andricioaei I; Perkins NC
Biophys J; 2011 Apr; 100(8):2016-23. PubMed ID: 21504738
[TBL] [Abstract][Full Text] [Related]
2. Friction and torque govern the relaxation of DNA supercoils by eukaryotic topoisomerase IB.
Koster DA; Croquette V; Dekker C; Shuman S; Dekker NH
Nature; 2005 Mar; 434(7033):671-4. PubMed ID: 15800630
[TBL] [Abstract][Full Text] [Related]
3. Free energy calculations reveal rotating-ratchet mechanism for DNA supercoil relaxation by topoisomerase IB and its inhibition.
Wereszczynski J; Andricioaei I
Biophys J; 2010 Aug; 99(3):869-78. PubMed ID: 20682265
[TBL] [Abstract][Full Text] [Related]
4. Single-Molecule Supercoil Relaxation Assay as a Screening Tool to Determine the Mechanism and Efficacy of Human Topoisomerase IB Inhibitors.
Seol Y; Zhang H; Agama K; Lorence N; Pommier Y; Neuman KC
Mol Cancer Ther; 2015 Nov; 14(11):2552-9. PubMed ID: 26351326
[TBL] [Abstract][Full Text] [Related]
5. Variola type IB DNA topoisomerase: DNA binding and supercoil unwinding using engineered DNA minicircles.
Anderson BG; Stivers JT
Biochemistry; 2014 Jul; 53(26):4302-15. PubMed ID: 24945825
[TBL] [Abstract][Full Text] [Related]
6. Cellular strategies for regulating DNA supercoiling: a single-molecule perspective.
Koster DA; Crut A; Shuman S; Bjornsti MA; Dekker NH
Cell; 2010 Aug; 142(4):519-30. PubMed ID: 20723754
[TBL] [Abstract][Full Text] [Related]
7. The influence of salt on the structure and energetics of supercoiled DNA.
Schlick T; Li B; Olson WK
Biophys J; 1994 Dec; 67(6):2146-66. PubMed ID: 7696459
[TBL] [Abstract][Full Text] [Related]
8. Chirality sensing by Escherichia coli topoisomerase IV and the mechanism of type II topoisomerases.
Stone MD; Bryant Z; Crisona NJ; Smith SB; Vologodskii A; Bustamante C; Cozzarelli NR
Proc Natl Acad Sci U S A; 2003 Jul; 100(15):8654-9. PubMed ID: 12857958
[TBL] [Abstract][Full Text] [Related]
9. Chiral discrimination and writhe-dependent relaxation mechanism of human topoisomerase IIα.
Seol Y; Gentry AC; Osheroff N; Neuman KC
J Biol Chem; 2013 May; 288(19):13695-703. PubMed ID: 23508957
[TBL] [Abstract][Full Text] [Related]
10. Rotation of DNA around intact strand in human topoisomerase I implies distinct mechanisms for positive and negative supercoil relaxation.
Sari L; Andricioaei I
Nucleic Acids Res; 2005; 33(20):6621-34. PubMed ID: 16314322
[TBL] [Abstract][Full Text] [Related]
11. A kinetic clutch governs religation by type IB topoisomerases and determines camptothecin sensitivity.
Seol Y; Zhang H; Pommier Y; Neuman KC
Proc Natl Acad Sci U S A; 2012 Oct; 109(40):16125-30. PubMed ID: 22991469
[TBL] [Abstract][Full Text] [Related]
12. Topoisomerase V relaxes supercoiled DNA by a constrained swiveling mechanism.
Taneja B; Schnurr B; Slesarev A; Marko JF; Mondragón A
Proc Natl Acad Sci U S A; 2007 Sep; 104(37):14670-5. PubMed ID: 17804808
[TBL] [Abstract][Full Text] [Related]
13. Vaccinia DNA topoisomerase I: evidence supporting a free rotation mechanism for DNA supercoil relaxation.
Stivers JT; Harris TK; Mildvan AS
Biochemistry; 1997 Apr; 36(17):5212-22. PubMed ID: 9136883
[TBL] [Abstract][Full Text] [Related]
14. Calf-thymus topoisomerase I equilibrates metastable secondary structure subsequent to relaxation of superhelical stress.
Brewood GP; Delrow JJ; Schurr JM
Biochemistry; 2010 Apr; 49(16):3367-80. PubMed ID: 20178373
[TBL] [Abstract][Full Text] [Related]
15. Bacterial topoisomerase I and topoisomerase III relax supercoiled DNA via distinct pathways.
Terekhova K; Gunn KH; Marko JF; Mondragón A
Nucleic Acids Res; 2012 Nov; 40(20):10432-40. PubMed ID: 22923519
[TBL] [Abstract][Full Text] [Related]
16. Preferential relaxation of positively supercoiled DNA by E. coli topoisomerase IV in single-molecule and ensemble measurements.
Crisona NJ; Strick TR; Bensimon D; Croquette V; Cozzarelli NR
Genes Dev; 2000 Nov; 14(22):2881-92. PubMed ID: 11090135
[TBL] [Abstract][Full Text] [Related]
17. Twist-writhe partitioning in a coarse-grained DNA minicircle model.
Sayar M; Avşaroğlu B; Kabakçioğlu A
Phys Rev E Stat Nonlin Soft Matter Phys; 2010 Apr; 81(4 Pt 1):041916. PubMed ID: 20481762
[TBL] [Abstract][Full Text] [Related]
18. Tryptophane-205 of human topoisomerase I is essential for camptothecin inhibition of negative but not positive supercoil removal.
Frøhlich RF; Veigaard C; Andersen FF; McClendon AK; Gentry AC; Andersen AH; Osheroff N; Stevnsner T; Knudsen BR
Nucleic Acids Res; 2007; 35(18):6170-80. PubMed ID: 17827209
[TBL] [Abstract][Full Text] [Related]
19. Assays for the preferential binding of human topoisomerase I to supercoiled DNA.
Yang Z; Champoux JJ
Methods Mol Biol; 2009; 582():49-57. PubMed ID: 19763941
[TBL] [Abstract][Full Text] [Related]
20. Simulation of DNA Supercoil Relaxation.
Ivenso ID; Lillian TD
Biophys J; 2016 May; 110(10):2176-84. PubMed ID: 27224483
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]