189 related articles for article (PubMed ID: 21515634)
1. WebFR3D--a server for finding, aligning and analyzing recurrent RNA 3D motifs.
Petrov AI; Zirbel CL; Leontis NB
Nucleic Acids Res; 2011 Jul; 39(Web Server issue):W50-5. PubMed ID: 21515634
[TBL] [Abstract][Full Text] [Related]
2. FR3D: finding local and composite recurrent structural motifs in RNA 3D structures.
Sarver M; Zirbel CL; Stombaugh J; Mokdad A; Leontis NB
J Math Biol; 2008 Jan; 56(1-2):215-52. PubMed ID: 17694311
[TBL] [Abstract][Full Text] [Related]
3. Automated classification of RNA 3D motifs and the RNA 3D Motif Atlas.
Petrov AI; Zirbel CL; Leontis NB
RNA; 2013 Oct; 19(10):1327-40. PubMed ID: 23970545
[TBL] [Abstract][Full Text] [Related]
4. JAR3D Webserver: Scoring and aligning RNA loop sequences to known 3D motifs.
Roll J; Zirbel CL; Sweeney B; Petrov AI; Leontis N
Nucleic Acids Res; 2016 Jul; 44(W1):W320-7. PubMed ID: 27235417
[TBL] [Abstract][Full Text] [Related]
5. DIAL: a web server for the pairwise alignment of two RNA three-dimensional structures using nucleotide, dihedral angle and base-pairing similarities.
Ferrè F; Ponty Y; Lorenz WA; Clote P
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W659-68. PubMed ID: 17567620
[TBL] [Abstract][Full Text] [Related]
6. WebSTAR3D: a web server for RNA 3D structural alignment.
Holzhauser E; Ge P; Zhang S
Bioinformatics; 2016 Dec; 32(23):3673-3675. PubMed ID: 27497443
[TBL] [Abstract][Full Text] [Related]
7. R3D-2-MSA: the RNA 3D structure-to-multiple sequence alignment server.
Cannone JJ; Sweeney BA; Petrov AI; Gutell RR; Zirbel CL; Leontis N
Nucleic Acids Res; 2015 Jul; 43(W1):W15-23. PubMed ID: 26048960
[TBL] [Abstract][Full Text] [Related]
8. NASSAM: a server to search for and annotate tertiary interactions and motifs in three-dimensional structures of complex RNA molecules.
Hamdani HY; Appasamy SD; Willett P; Artymiuk PJ; Firdaus-Raih M
Nucleic Acids Res; 2012 Jul; 40(Web Server issue):W35-41. PubMed ID: 22661578
[TBL] [Abstract][Full Text] [Related]
9. MultiSETTER: web server for multiple RNA structure comparison.
Čech P; Hoksza D; Svozil D
BMC Bioinformatics; 2015 Aug; 16():253. PubMed ID: 26264783
[TBL] [Abstract][Full Text] [Related]
10. iPARTS: an improved tool of pairwise alignment of RNA tertiary structures.
Wang CW; Chen KT; Lu CL
Nucleic Acids Res; 2010 Jul; 38(Web Server issue):W340-7. PubMed ID: 20507908
[TBL] [Abstract][Full Text] [Related]
11. VfoldLA: A web server for loop assembly-based prediction of putative 3D RNA structures.
Xu X; Zhao C; Chen SJ
J Struct Biol; 2019 Sep; 207(3):235-240. PubMed ID: 31173857
[TBL] [Abstract][Full Text] [Related]
12. R3D Align web server for global nucleotide to nucleotide alignments of RNA 3D structures.
Rahrig RR; Petrov AI; Leontis NB; Zirbel CL
Nucleic Acids Res; 2013 Jul; 41(Web Server issue):W15-21. PubMed ID: 23716643
[TBL] [Abstract][Full Text] [Related]
13. SCOR: Structural Classification of RNA, version 2.0.
Tamura M; Hendrix DK; Klosterman PS; Schimmelman NR; Brenner SE; Holbrook SR
Nucleic Acids Res; 2004 Jan; 32(Database issue):D182-4. PubMed ID: 14681389
[TBL] [Abstract][Full Text] [Related]
14. R3D-BLAST2: an improved search tool for similar RNA 3D substructures.
Yen CY; Lin JC; Chen KT; Lu CL
BMC Bioinformatics; 2017 Dec; 18(Suppl 16):574. PubMed ID: 29297283
[TBL] [Abstract][Full Text] [Related]
15. The ARTS web server for aligning RNA tertiary structures.
Dror O; Nussinov R; Wolfson HJ
Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W412-5. PubMed ID: 16845038
[TBL] [Abstract][Full Text] [Related]
16. The RNA 3D Motif Atlas: Computational methods for extraction, organization and evaluation of RNA motifs.
Parlea LG; Sweeney BA; Hosseini-Asanjan M; Zirbel CL; Leontis NB
Methods; 2016 Jul; 103():99-119. PubMed ID: 27125735
[TBL] [Abstract][Full Text] [Related]
17. RNAMotifScan: automatic identification of RNA structural motifs using secondary structural alignment.
Zhong C; Tang H; Zhang S
Nucleic Acids Res; 2010 Oct; 38(18):e176. PubMed ID: 20696653
[TBL] [Abstract][Full Text] [Related]
18. 3dRPC: a web server for 3D RNA-protein structure prediction.
Huang Y; Li H; Xiao Y
Bioinformatics; 2018 Apr; 34(7):1238-1240. PubMed ID: 29186336
[TBL] [Abstract][Full Text] [Related]
19. FASTR3D: a fast and accurate search tool for similar RNA 3D structures.
Lai CE; Tsai MY; Liu YC; Wang CW; Chen KT; Lu CL
Nucleic Acids Res; 2009 Jul; 37(Web Server issue):W287-95. PubMed ID: 19435878
[TBL] [Abstract][Full Text] [Related]
20. Ribostral: an RNA 3D alignment analyzer and viewer based on basepair isostericities.
Mokdad A; Leontis NB
Bioinformatics; 2006 Sep; 22(17):2168-70. PubMed ID: 16820430
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
