These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

512 related articles for article (PubMed ID: 21516085)

  • 1. Metabolic labeling of RNA uncovers principles of RNA production and degradation dynamics in mammalian cells.
    Rabani M; Levin JZ; Fan L; Adiconis X; Raychowdhury R; Garber M; Gnirke A; Nusbaum C; Hacohen N; Friedman N; Amit I; Regev A
    Nat Biotechnol; 2011 May; 29(5):436-42. PubMed ID: 21516085
    [TBL] [Abstract][Full Text] [Related]  

  • 2. High-resolution sequencing and modeling identifies distinct dynamic RNA regulatory strategies.
    Rabani M; Raychowdhury R; Jovanovic M; Rooney M; Stumpo DJ; Pauli A; Hacohen N; Schier AF; Blackshear PJ; Friedman N; Amit I; Regev A
    Cell; 2014 Dec; 159(7):1698-710. PubMed ID: 25497548
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Genome-wide map of RNA degradation kinetics patterns in dendritic cells after LPS stimulation facilitates identification of primary sequence and secondary structure motifs in mRNAs.
    Kumagai Y; Vandenbon A; Teraguchi S; Akira S; Suzuki Y
    BMC Genomics; 2016 Dec; 17(Suppl 13):1032. PubMed ID: 28155712
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Metabolic labeling of RNA uncovers the contribution of transcription and decay rates on hypoxia-induced changes in RNA levels.
    Tiana M; Acosta-Iborra B; Hernández R; Galiana C; Fernández-Moreno MÁ; Jimenez B; Del Peso L
    RNA; 2020 Aug; 26(8):1006-1022. PubMed ID: 32295863
    [TBL] [Abstract][Full Text] [Related]  

  • 5. INSPEcT: a computational tool to infer mRNA synthesis, processing and degradation dynamics from RNA- and 4sU-seq time course experiments.
    de Pretis S; Kress T; Morelli MJ; Melloni GE; Riva L; Amati B; Pelizzola M
    Bioinformatics; 2015 Sep; 31(17):2829-35. PubMed ID: 25957348
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Simultaneous processing and degradation of mitochondrial RNAs revealed by circularized RNA sequencing.
    Kuznetsova I; Siira SJ; Shearwood AJ; Ermer JA; Filipovska A; Rackham O
    Nucleic Acids Res; 2017 May; 45(9):5487-5500. PubMed ID: 28201688
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Illuminating Enhancer Transcription at Nucleotide Resolution with Native Elongating Transcript Sequencing (NET-Seq).
    Jasnovidova O; Arnold M; Mayer A
    Methods Mol Biol; 2021; 2351():41-65. PubMed ID: 34382183
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Metabolic Labeling of Newly Synthesized RNA with 4sU to in Parallel Assess RNA Transcription and Decay.
    Sun W; Chen W
    Methods Mol Biol; 2018; 1720():25-34. PubMed ID: 29236249
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Sequencing metabolically labeled transcripts in single cells reveals mRNA turnover strategies.
    Battich N; Beumer J; de Barbanson B; Krenning L; Baron CS; Tanenbaum ME; Clevers H; van Oudenaarden A
    Science; 2020 Mar; 367(6482):1151-1156. PubMed ID: 32139547
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Estimating RNA dynamics using one time point for one sample in a single-pulse metabolic labeling experiment.
    Hersch M; Biasini A; Marques AC; Bergmann S
    BMC Bioinformatics; 2022 Apr; 23(1):147. PubMed ID: 35459101
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Genome-wide RNA polymerase II profiles and RNA accumulation reveal kinetics of transcription and associated epigenetic changes during diurnal cycles.
    Le Martelot G; Canella D; Symul L; Migliavacca E; Gilardi F; Liechti R; Martin O; Harshman K; Delorenzi M; Desvergne B; Herr W; Deplancke B; Schibler U; Rougemont J; Guex N; Hernandez N; Naef F;
    PLoS Biol; 2012; 10(11):e1001442. PubMed ID: 23209382
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Transcription Dynamics Regulate Poly(A) Tails and Expression of the RNA Degradation Machinery to Balance mRNA Levels.
    Slobodin B; Bahat A; Sehrawat U; Becker-Herman S; Zuckerman B; Weiss AN; Han R; Elkon R; Agami R; Ulitsky I; Shachar I; Dikstein R
    Mol Cell; 2020 May; 78(3):434-444.e5. PubMed ID: 32294471
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Determining mRNA Decay Rates Using RNA Approach to Equilibrium Sequencing (RATE-Seq).
    Abdul-Rahman F; Gresham D
    Methods Mol Biol; 2018; 1720():15-24. PubMed ID: 29236248
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Dual RNA sequencing reveals the expression of unique transcriptomic signatures in lipopolysaccharide-induced BV-2 microglial cells.
    Das A; Chai JC; Kim SH; Park KS; Lee YS; Jung KH; Chai YG
    PLoS One; 2015; 10(3):e0121117. PubMed ID: 25811458
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Genome-wide dynamics of RNA synthesis, processing, and degradation without RNA metabolic labeling.
    Furlan M; Galeota E; Gaudio ND; Dassi E; Caselle M; de Pretis S; Pelizzola M
    Genome Res; 2020 Oct; 30(10):1492-1507. PubMed ID: 32978246
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A genome wide transcriptional model of the complex response to pre-TCR signalling during thymocyte differentiation.
    Sahni H; Ross S; Barbarulo A; Solanki A; Lau CI; Furmanski A; Saldaña JI; Ono M; Hubank M; Barenco M; Crompton T
    Oncotarget; 2015 Oct; 6(30):28646-60. PubMed ID: 26415229
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Coupled pre-mRNA and mRNA dynamics unveil operational strategies underlying transcriptional responses to stimuli.
    Zeisel A; Köstler WJ; Molotski N; Tsai JM; Krauthgamer R; Jacob-Hirsch J; Rechavi G; Soen Y; Jung S; Yarden Y; Domany E
    Mol Syst Biol; 2011 Sep; 7():529. PubMed ID: 21915116
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Interplay of mRNA capping and transcription machineries.
    Kachaev ZM; Lebedeva LA; Kozlov EN; Shidlovskii YV
    Biosci Rep; 2020 Jan; 40(1):. PubMed ID: 31904821
    [TBL] [Abstract][Full Text] [Related]  

  • 19. RNA polymerase II pausing downstream of core histone genes is different from genes producing polyadenylated transcripts.
    Anamika K; Gyenis À; Poidevin L; Poch O; Tora L
    PLoS One; 2012; 7(6):e38769. PubMed ID: 22701709
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Temporal ChIP-on-Chip of RNA-Polymerase-II to detect novel gene activation events during photoreceptor maturation.
    Tummala P; Mali RS; Guzman E; Zhang X; Mitton KP
    Mol Vis; 2010 Feb; 16():252-71. PubMed ID: 20161818
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 26.