BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

235 related articles for article (PubMed ID: 21524307)

  • 1. Mutagenesis Objective Search and Selection Tool (MOSST): an algorithm to predict structure-function related mutations in proteins.
    Olivera-Nappa A; Andrews BA; Asenjo JA
    BMC Bioinformatics; 2011 Apr; 12():122. PubMed ID: 21524307
    [TBL] [Abstract][Full Text] [Related]  

  • 2. AL2CO: calculation of positional conservation in a protein sequence alignment.
    Pei J; Grishin NV
    Bioinformatics; 2001 Aug; 17(8):700-12. PubMed ID: 11524371
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Folic acid supplementation and malaria susceptibility and severity among people taking antifolate antimalarial drugs in endemic areas.
    Crider K; Williams J; Qi YP; Gutman J; Yeung L; Mai C; Finkelstain J; Mehta S; Pons-Duran C; Menéndez C; Moraleda C; Rogers L; Daniels K; Green P
    Cochrane Database Syst Rev; 2022 Feb; 2(2022):. PubMed ID: 36321557
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Prediction of deleterious functional effects of amino acid mutations using a library of structure-based function descriptors.
    Herrgard S; Cammer SA; Hoffman BT; Knutson S; Gallina M; Speir JA; Fetrow JS; Baxter SM
    Proteins; 2003 Dec; 53(4):806-16. PubMed ID: 14635123
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Statistical geometry based prediction of nonsynonymous SNP functional effects using random forest and neuro-fuzzy classifiers.
    Barenboim M; Masso M; Vaisman II; Jamison DC
    Proteins; 2008 Jun; 71(4):1930-9. PubMed ID: 18186470
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Mutation analysis of pathogenic non-synonymous single nucleotide polymorphisms (nsSNPs) in WFS1 gene through computational approaches.
    Zhao J; Zhang S; Jiang Y; Liu Y; Zhu Q
    Sci Rep; 2023 Apr; 13(1):6774. PubMed ID: 37185285
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Protein meta-functional signatures from combining sequence, structure, evolution, and amino acid property information.
    Wang K; Horst JA; Cheng G; Nickle DC; Samudrala R
    PLoS Comput Biol; 2008 Sep; 4(9):e1000181. PubMed ID: 18818722
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Accurate Sequence-Based Prediction of Deleterious nsSNPs with Multiple Sequence Profiles and Putative Binding Residues.
    Song R; Cao B; Peng Z; Oldfield CJ; Kurgan L; Wong KC; Yang J
    Biomolecules; 2021 Sep; 11(9):. PubMed ID: 34572550
    [TBL] [Abstract][Full Text] [Related]  

  • 9. In Silico Site-Directed Mutagenesis Informs Species-Specific Predictions of Chemical Susceptibility Derived From the Sequence Alignment to Predict Across Species Susceptibility (SeqAPASS) Tool.
    Doering JA; Lee S; Kristiansen K; Evenseth L; Barron MG; Sylte I; LaLone CA
    Toxicol Sci; 2018 Nov; 166(1):131-145. PubMed ID: 30060110
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Modeling effects of human single nucleotide polymorphisms on protein-protein interactions.
    Teng S; Madej T; Panchenko A; Alexov E
    Biophys J; 2009 Mar; 96(6):2178-88. PubMed ID: 19289044
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Mutual information in protein multiple sequence alignments reveals two classes of coevolving positions.
    Gloor GB; Martin LC; Wahl LM; Dunn SD
    Biochemistry; 2005 May; 44(19):7156-65. PubMed ID: 15882054
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Structural position correlation analysis (SPCA) for protein family.
    Du QS; Meng JZ; Wang CH; Long SY; Huang RB
    PLoS One; 2011; 6(12):e28206. PubMed ID: 22163002
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Protein sequence alignments: a strategy for the hierarchical analysis of residue conservation.
    Livingstone CD; Barton GJ
    Comput Appl Biosci; 1993 Dec; 9(6):745-56. PubMed ID: 8143162
    [TBL] [Abstract][Full Text] [Related]  

  • 14. ConSurf-DB: An accessible repository for the evolutionary conservation patterns of the majority of PDB proteins.
    Ben Chorin A; Masrati G; Kessel A; Narunsky A; Sprinzak J; Lahav S; Ashkenazy H; Ben-Tal N
    Protein Sci; 2020 Jan; 29(1):258-267. PubMed ID: 31702846
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Correlation analysis for protein evolutionary family based on amino acid position mutations and application in PDZ domain.
    Du QS; Wang CH; Liao SM; Huang RB
    PLoS One; 2010 Oct; 5(10):e13207. PubMed ID: 20949088
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Multiscale modeling of the causal functional roles of nsSNPs in a genome-wide association study: application to hypoxia.
    Xie L; Ng C; Ali T; Valencia R; Ferreira BL; Xue V; Tanweer M; Zhou D; Haddad GG; Bourne PE; Xie L
    BMC Genomics; 2013; 14 Suppl 3(Suppl 3):S9. PubMed ID: 23819581
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Assessment of structurally and functionally high-risk nsSNPs impacts on human bone morphogenetic protein receptor type IA (BMPR1A) by computational approach.
    Islam MJ; Parves MR; Mahmud S; Tithi FA; Reza MA
    Comput Biol Chem; 2019 Jun; 80():31-45. PubMed ID: 30884445
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Knowledge-based computational mutagenesis for predicting the disease potential of human non-synonymous single nucleotide polymorphisms.
    Masso M; Vaisman II
    J Theor Biol; 2010 Oct; 266(4):560-8. PubMed ID: 20655929
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Improvement in protein functional site prediction by distinguishing structural and functional constraints on protein family evolution using computational design.
    Cheng G; Qian B; Samudrala R; Baker D
    Nucleic Acids Res; 2005; 33(18):5861-7. PubMed ID: 16224101
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Detailed computational study of p53 and p16: using evolutionary sequence analysis and disease-associated mutations to predict the functional consequences of allelic variants.
    Greenblatt MS; Beaudet JG; Gump JR; Godin KS; Trombley L; Koh J; Bond JP
    Oncogene; 2003 Feb; 22(8):1150-63. PubMed ID: 12606942
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.