BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

396 related articles for article (PubMed ID: 21526843)

  • 1. MSSimulator: Simulation of mass spectrometry data.
    Bielow C; Aiche S; Andreotti S; Reinert K
    J Proteome Res; 2011 Jul; 10(7):2922-9. PubMed ID: 21526843
    [TBL] [Abstract][Full Text] [Related]  

  • 2. MassUntangler: a novel alignment tool for label-free liquid chromatography-mass spectrometry proteomic data.
    Ballardini R; Benevento M; Arrigoni G; Pattini L; Roda A
    J Chromatogr A; 2011 Dec; 1218(49):8859-68. PubMed ID: 21783198
    [TBL] [Abstract][Full Text] [Related]  

  • 3. LC-MSsim--a simulation software for liquid chromatography mass spectrometry data.
    Schulz-Trieglaff O; Pfeifer N; Gröpl C; Kohlbacher O; Reinert K
    BMC Bioinformatics; 2008 Oct; 9():423. PubMed ID: 18842122
    [TBL] [Abstract][Full Text] [Related]  

  • 4. SuperHirn - a novel tool for high resolution LC-MS-based peptide/protein profiling.
    Mueller LN; Rinner O; Schmidt A; Letarte S; Bodenmiller B; Brusniak MY; Vitek O; Aebersold R; Müller M
    Proteomics; 2007 Oct; 7(19):3470-80. PubMed ID: 17726677
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Computational methods for the comparative quantification of proteins in label-free LCn-MS experiments.
    Wong JW; Sullivan MJ; Cagney G
    Brief Bioinform; 2008 Mar; 9(2):156-65. PubMed ID: 17905794
    [TBL] [Abstract][Full Text] [Related]  

  • 6. An iterative strategy for precursor ion selection for LC-MS/MS based shotgun proteomics.
    Zerck A; Nordhoff E; Resemann A; Mirgorodskaya E; Suckau D; Reinert K; Lehrach H; Gobom J
    J Proteome Res; 2009 Jul; 8(7):3239-51. PubMed ID: 19402737
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Shotgun proteomics: tools for the analysis of complex biological systems.
    Wu CC; MacCoss MJ
    Curr Opin Mol Ther; 2002 Jun; 4(3):242-50. PubMed ID: 12139310
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Isotope coded protein label quantification of serum proteins--comparison with the label-free LC-MS and validation using the MRM approach.
    Turtoi A; Mazzucchelli GD; De Pauw E
    Talanta; 2010 Feb; 80(4):1487-95. PubMed ID: 20082806
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Improving mass and liquid chromatography based identification of proteins using bayesian scoring.
    Chen SS; Deutsch EW; Yi EC; Li XJ; Goodlett DR; Aebersold R
    J Proteome Res; 2005; 4(6):2174-84. PubMed ID: 16335964
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A suite of algorithms for the comprehensive analysis of complex protein mixtures using high-resolution LC-MS.
    Bellew M; Coram M; Fitzgibbon M; Igra M; Randolph T; Wang P; May D; Eng J; Fang R; Lin C; Chen J; Goodlett D; Whiteaker J; Paulovich A; McIntosh M
    Bioinformatics; 2006 Aug; 22(15):1902-9. PubMed ID: 16766559
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Making broad proteome protein measurements in 1-5 min using high-speed RPLC separations and high-accuracy mass measurements.
    Shen Y; Strittmatter EF; Zhang R; Metz TO; Moore RJ; Li F; Udseth HR; Smith RD; Unger KK; Kumar D; Lubda D
    Anal Chem; 2005 Dec; 77(23):7763-73. PubMed ID: 16316187
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Retention time alignment algorithms for LC/MS data must consider non-linear shifts.
    Podwojski K; Fritsch A; Chamrad DC; Paul W; Sitek B; Stühler K; Mutzel P; Stephan C; Meyer HE; Urfer W; Ickstadt K; Rahnenführer J
    Bioinformatics; 2009 Mar; 25(6):758-64. PubMed ID: 19176558
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A geometric approach for the alignment of liquid chromatography-mass spectrometry data.
    Lange E; Gröpl C; Schulz-Trieglaff O; Leinenbach A; Huber C; Reinert K
    Bioinformatics; 2007 Jul; 23(13):i273-81. PubMed ID: 17646306
    [TBL] [Abstract][Full Text] [Related]  

  • 14. i-RUBY: a novel software for quantitative analysis of highly accurate shotgun-proteomics liquid chromatography/tandem mass spectrometry data obtained without stable-isotope labeling of proteins.
    Wada K; Ogiwara A; Nagasaka K; Tanaka N; Komatsu Y
    Rapid Commun Mass Spectrom; 2011 Apr; 25(7):960-8. PubMed ID: 21416533
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Semi-supervised LC/MS alignment for differential proteomics.
    Fischer B; Grossmann J; Roth V; Gruissem W; Baginsky S; Buhmann JM
    Bioinformatics; 2006 Jul; 22(14):e132-40. PubMed ID: 16873463
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Visual analysis of gel-free proteome data.
    Linsen L; Löcherbach J; Berth M; Becher D; Bernhardt J
    IEEE Trans Vis Comput Graph; 2006; 12(4):497-508. PubMed ID: 16805259
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Comparative LC-MS: a landscape of peaks and valleys.
    America AH; Cordewener JH
    Proteomics; 2008 Feb; 8(4):731-49. PubMed ID: 18297651
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Extended Range Proteomic Analysis (ERPA): a new and sensitive LC-MS platform for high sequence coverage of complex proteins with extensive post-translational modifications-comprehensive analysis of beta-casein and epidermal growth factor receptor (EGFR).
    Wu SL; Kim J; Hancock WS; Karger B
    J Proteome Res; 2005; 4(4):1155-70. PubMed ID: 16083266
    [TBL] [Abstract][Full Text] [Related]  

  • 19. An overview of label-free quantitation methods in proteomics by mass spectrometry.
    Wong JW; Cagney G
    Methods Mol Biol; 2010; 604():273-83. PubMed ID: 20013377
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations.
    Elias JE; Haas W; Faherty BK; Gygi SP
    Nat Methods; 2005 Sep; 2(9):667-75. PubMed ID: 16118637
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 20.