These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
2. [Computational approaches for identification and classification of transposable elements in eukaryotic genomes]. Xu HE; Zhang HH; Han MJ; Shen YH; Huang XZ; Xiang ZH; Zhang Z Yi Chuan; 2012 Aug; 34(8):1009-19. PubMed ID: 22917906 [TBL] [Abstract][Full Text] [Related]
3. Characterization and functional annotation of nested transposable elements in eukaryotic genomes. Gao C; Xiao M; Ren X; Hayward A; Yin J; Wu L; Fu D; Li J Genomics; 2012 Oct; 100(4):222-30. PubMed ID: 22800764 [TBL] [Abstract][Full Text] [Related]
4. Bioinformatics and genomic analysis of transposable elements in eukaryotic genomes. Janicki M; Rooke R; Yang G Chromosome Res; 2011 Aug; 19(6):787-808. PubMed ID: 21850457 [TBL] [Abstract][Full Text] [Related]
5. Transposable elements donate lineage-specific regulatory sequences to host genomes. Mariño-Ramírez L; Lewis KC; Landsman D; Jordan IK Cytogenet Genome Res; 2005; 110(1-4):333-41. PubMed ID: 16093685 [TBL] [Abstract][Full Text] [Related]
6. Structural and functional liaisons between transposable elements and satellite DNAs. Meštrović N; Mravinac B; Pavlek M; Vojvoda-Zeljko T; Šatović E; Plohl M Chromosome Res; 2015 Sep; 23(3):583-96. PubMed ID: 26293606 [TBL] [Abstract][Full Text] [Related]
7. Paucity of chimeric gene-transposable element transcripts in the Drosophila melanogaster genome. Lipatov M; Lenkov K; Petrov DA; Bergman CM BMC Biol; 2005 Nov; 3():24. PubMed ID: 16283942 [TBL] [Abstract][Full Text] [Related]
8. Exploration of the Drosophila buzzatii transposable element content suggests underestimation of repeats in Drosophila genomes. Rius N; Guillén Y; Delprat A; Kapusta A; Feschotte C; Ruiz A BMC Genomics; 2016 May; 17():344. PubMed ID: 27164953 [TBL] [Abstract][Full Text] [Related]
9. Transposable element annotation of the rice genome. Juretic N; Bureau TE; Bruskiewich RM Bioinformatics; 2004 Jan; 20(2):155-60. PubMed ID: 14734305 [TBL] [Abstract][Full Text] [Related]
10. Identification, characterization and distribution of transposable elements in the flax (Linum usitatissimum L.) genome. González LG; Deyholos MK BMC Genomics; 2012 Nov; 13():644. PubMed ID: 23171245 [TBL] [Abstract][Full Text] [Related]
11. Accurate Transposable Element Annotation Is Vital When Analyzing New Genome Assemblies. Platt RN; Blanco-Berdugo L; Ray DA Genome Biol Evol; 2016 Jan; 8(2):403-10. PubMed ID: 26802115 [TBL] [Abstract][Full Text] [Related]
12. Identifying repeats and transposable elements in sequenced genomes: how to find your way through the dense forest of programs. Lerat E Heredity (Edinb); 2010 Jun; 104(6):520-33. PubMed ID: 19935826 [TBL] [Abstract][Full Text] [Related]
13. Transposable elements domesticated and neofunctionalized by eukaryotic genomes. Alzohairy AM; Gyulai G; Jansen RK; Bahieldin A Plasmid; 2013 Jan; 69(1):1-15. PubMed ID: 22960324 [TBL] [Abstract][Full Text] [Related]
14. DeepTE: a computational method for de novo classification of transposons with convolutional neural network. Yan H; Bombarely A; Li S Bioinformatics; 2020 Aug; 36(15):4269-4275. PubMed ID: 32415954 [TBL] [Abstract][Full Text] [Related]
15. Identification of Transposable Elements in Schistosoma mansoni. Philippsen GS; DeMarco R Methods Mol Biol; 2020; 2151():135-144. PubMed ID: 32452001 [TBL] [Abstract][Full Text] [Related]
16. The impact of transposable elements on eukaryotic genomes: from genome size increase to genetic adaptation to stressful environments. Chénais B; Caruso A; Hiard S; Casse N Gene; 2012 Nov; 509(1):7-15. PubMed ID: 22921893 [TBL] [Abstract][Full Text] [Related]
18. Novel transposable elements from Anopheles gambiae. Fernández-Medina RD; Struchiner CJ; Ribeiro JM BMC Genomics; 2011 May; 12():260. PubMed ID: 21605407 [TBL] [Abstract][Full Text] [Related]
19. PlanTEnrichment: A How-to Guide on Rapid Identification of Transposable Elements Associated with Regions of Interest in Select Plant Genomes. Eskier D; Arıbaş A; Karakülah G Methods Mol Biol; 2023; 2703():59-70. PubMed ID: 37646937 [TBL] [Abstract][Full Text] [Related]