These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

183 related articles for article (PubMed ID: 21538644)

  • 1. Revisiting the Ramachandran plot from a new angle.
    Zhou AQ; O'Hern CS; Regan L
    Protein Sci; 2011 Jul; 20(7):1166-71. PubMed ID: 21538644
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Redrawing the Ramachandran plot after inclusion of hydrogen-bonding constraints.
    Porter LL; Rose GD
    Proc Natl Acad Sci U S A; 2011 Jan; 108(1):109-13. PubMed ID: 21148101
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Factors affecting the amplitude of the τ angle in proteins: a revisitation.
    Balasco N; Esposito L; Vitagliano L
    Acta Crystallogr D Struct Biol; 2017 Jul; 73(Pt 7):618-625. PubMed ID: 28695862
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Ramachandran maps for side chains in globular proteins.
    Rose GD
    Proteins; 2019 May; 87(5):357-364. PubMed ID: 30629766
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Revisiting the Ramachandran plot: hard-sphere repulsion, electrostatics, and H-bonding in the alpha-helix.
    Ho BK; Thomas A; Brasseur R
    Protein Sci; 2003 Nov; 12(11):2508-22. PubMed ID: 14573863
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Disallowed Ramachandran conformations of amino acid residues in protein structures.
    Gunasekaran K; Ramakrishnan C; Balaram P
    J Mol Biol; 1996 Nov; 264(1):191-8. PubMed ID: 8950277
    [TBL] [Abstract][Full Text] [Related]  

  • 7. An exhaustive survey of regular peptide conformations using a new metric for backbone handedness (
    Mannige RV
    PeerJ; 2017; 5():e3327. PubMed ID: 28533975
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Protein folding is a convergent problem!
    Das Gupta D; Kaushik R; Jayaram B
    Biochem Biophys Res Commun; 2016 Nov; 480(4):741-744. PubMed ID: 27983988
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Conformational Strain Indicated by Ramachandran Angles for the Protein Backbone Is Only Weakly Related to the Flexibility.
    Ravikumar A; de Brevern AG; Srinivasan N
    J Phys Chem B; 2021 Mar; 125(10):2597-2606. PubMed ID: 33666418
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Experimental conformational energy maps of proteins and peptides.
    Balaji GA; Nagendra HG; Balaji VN; Rao SN
    Proteins; 2017 Jun; 85(6):979-1001. PubMed ID: 28168743
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Intrinsic α-helical and β-sheet conformational preferences: a computational case study of alanine.
    Caballero D; Määttä J; Zhou AQ; Sammalkorpi M; O'Hern CS; Regan L
    Protein Sci; 2014 Jul; 23(7):970-80. PubMed ID: 24753338
    [TBL] [Abstract][Full Text] [Related]  

  • 12. The Ramachandran plots of glycine and pre-proline.
    Ho BK; Brasseur R
    BMC Struct Biol; 2005 Aug; 5():14. PubMed ID: 16105172
    [TBL] [Abstract][Full Text] [Related]  

  • 13. The Ramachandran Number: An Order Parameter for Protein Geometry.
    Mannige RV; Kundu J; Whitelam S
    PLoS One; 2016; 11(8):e0160023. PubMed ID: 27490241
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Comprehensive analysis of the helix-X-helix motif in soluble proteins.
    Deville J; Rey J; Chabbert M
    Proteins; 2008 Jul; 72(1):115-35. PubMed ID: 18214950
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Dihedral angle preferences of amino acid residues forming various non-local interactions in proteins.
    Saravanan KM; Selvaraj S
    J Biol Phys; 2017 Jun; 43(2):265-278. PubMed ID: 28577238
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Main-chain conformational features at different conformations of the side-chains in proteins.
    Chakrabarti P; Pal D
    Protein Eng; 1998 Aug; 11(8):631-47. PubMed ID: 9749916
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Structure validation by Calpha geometry: phi,psi and Cbeta deviation.
    Lovell SC; Davis IW; Arendall WB; de Bakker PI; Word JM; Prisant MG; Richardson JS; Richardson DC
    Proteins; 2003 Feb; 50(3):437-50. PubMed ID: 12557186
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Revisiting the Ramachandran plot based on statistical analysis of static and dynamic characteristics of protein structures.
    Park SW; Lee BH; Song SH; Kim MK
    J Struct Biol; 2023 Mar; 215(1):107939. PubMed ID: 36707040
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Local Backbone Geometry Plays a Critical Role in Determining Conformational Preferences of Amino Acid Residues in Proteins.
    Balasco N; Esposito L; De Simone A; Vitagliano L
    Biomolecules; 2022 Aug; 12(9):. PubMed ID: 36139023
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Amino Acids in Nine Ligand-Prefer Ramachandran Regions.
    Cao C; Wang L; Chen X; Zou S; Wang G; Xu S
    Biomed Res Int; 2015; 2015():757495. PubMed ID: 26491686
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.