These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

110 related articles for article (PubMed ID: 21546394)

  • 1. ReMark: an automatic program for clustering orthologs flexibly combining a Recursive and a Markov clustering algorithms.
    Kim K; Kim W; Kim S
    Bioinformatics; 2011 Jun; 27(12):1731-3. PubMed ID: 21546394
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Clustering orthologous proteins across phylogenetically distant species.
    Kim S; Kang J; Chung YJ; Li J; Ryu KH
    Proteins; 2008 May; 71(3):1113-22. PubMed ID: 18004756
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Automatic clustering of orthologs and in-paralogs from pairwise species comparisons.
    Remm M; Storm CE; Sonnhammer EL
    J Mol Biol; 2001 Dec; 314(5):1041-52. PubMed ID: 11743721
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Evaluation of BLAST-based edge-weighting metrics used for homology inference with the Markov Clustering algorithm.
    Gibbons TR; Mount SM; Cooper ED; Delwiche CF
    BMC Bioinformatics; 2015 Jul; 16():218. PubMed ID: 26160651
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Gene Phylogenies and Orthologous Groups.
    Setubal JC; Stadler PF
    Methods Mol Biol; 2018; 1704():1-28. PubMed ID: 29277861
    [TBL] [Abstract][Full Text] [Related]  

  • 6. PS-MCL: parallel shotgun coarsened Markov clustering of protein interaction networks.
    Lim Y; Yu I; Seo D; Kang U; Sael L
    BMC Bioinformatics; 2019 Jul; 20(Suppl 13):381. PubMed ID: 31337329
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Detecting clusters of different geometrical shapes in microarray gene expression data.
    Kim DW; Lee KH; Lee D
    Bioinformatics; 2005 May; 21(9):1927-34. PubMed ID: 15647300
    [TBL] [Abstract][Full Text] [Related]  

  • 8. SCPS: a fast implementation of a spectral method for detecting protein families on a genome-wide scale.
    Nepusz T; Sasidharan R; Paccanaro A
    BMC Bioinformatics; 2010 Mar; 11():120. PubMed ID: 20214776
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Automatic clustering of orthologs and inparalogs shared by multiple proteomes.
    Alexeyenko A; Tamas I; Liu G; Sonnhammer EL
    Bioinformatics; 2006 Jul; 22(14):e9-15. PubMed ID: 16873526
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Hierarchical clustering algorithm for comprehensive orthologous-domain classification in multiple genomes.
    Uchiyama I
    Nucleic Acids Res; 2006; 34(2):647-58. PubMed ID: 16436801
    [TBL] [Abstract][Full Text] [Related]  

  • 11. PHOG-BLAST--a new generation tool for fast similarity search of protein families.
    Merkeev IV; Mironov AA
    BMC Evol Biol; 2006 Jun; 6():51. PubMed ID: 16792802
    [TBL] [Abstract][Full Text] [Related]  

  • 12. ConsensusCluster: a software tool for unsupervised cluster discovery in numerical data.
    Seiler M; Huang CC; Szalma S; Bhanot G
    OMICS; 2010 Feb; 14(1):109-13. PubMed ID: 20141333
    [TBL] [Abstract][Full Text] [Related]  

  • 13. HipMCL: a high-performance parallel implementation of the Markov clustering algorithm for large-scale networks.
    Azad A; Pavlopoulos GA; Ouzounis CA; Kyrpides NC; Buluç A
    Nucleic Acids Res; 2018 Apr; 46(6):e33. PubMed ID: 29315405
    [TBL] [Abstract][Full Text] [Related]  

  • 14. WebStruct and VisualStruct: Web interfaces and visualization for Structure software implemented in a cluster environment.
    Jayashree B; Rajgopal S; Hoisington D; Prasanth VP; Chandra S
    J Integr Bioinform; 2008 Sep; 5(1):. PubMed ID: 20134055
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Super paramagnetic clustering of protein sequences.
    Tetko IV; Facius A; Ruepp A; Mewes HW
    BMC Bioinformatics; 2005 Apr; 6():82. PubMed ID: 15804359
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Identifying functional modules in interaction networks through overlapping Markov clustering.
    Shih YK; Parthasarathy S
    Bioinformatics; 2012 Sep; 28(18):i473-i479. PubMed ID: 22962469
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A fast hierarchical clustering algorithm for large-scale protein sequence data sets.
    Szilágyi SM; Szilágyi L
    Comput Biol Med; 2014 May; 48():94-101. PubMed ID: 24657908
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Clustering evolving proteins into homologous families.
    Chan CX; Mahbob M; Ragan MA
    BMC Bioinformatics; 2013 Apr; 14():120. PubMed ID: 23566217
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Incremental generation of summarized clustering hierarchy for protein family analysis.
    Chen CY; Oyang YJ; Juan HF
    Bioinformatics; 2004 Nov; 20(16):2586-96. PubMed ID: 15130937
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Clustering of main orthologs for multiple genomes.
    Fu Z; Jiang T
    Comput Syst Bioinformatics Conf; 2007; 6():195-201. PubMed ID: 17951824
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.