These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
8. Prediction and design of DNA and RNA structures. Andersen ES N Biotechnol; 2010 Jul; 27(3):184-93. PubMed ID: 20193785 [TBL] [Abstract][Full Text] [Related]
10. New algorithms to represent complex pseudoknotted RNA structures in dot-bracket notation. Antczak M; Popenda M; Zok T; Zurkowski M; Adamiak RW; Szachniuk M Bioinformatics; 2018 Apr; 34(8):1304-1312. PubMed ID: 29236971 [TBL] [Abstract][Full Text] [Related]
11. Improving the accuracy of predicting secondary structure for aligned RNA sequences. Hamada M; Sato K; Asai K Nucleic Acids Res; 2011 Jan; 39(2):393-402. PubMed ID: 20843778 [TBL] [Abstract][Full Text] [Related]
13. On the approximation of optimal structures for RNA-RNA interaction. Mneimneh S IEEE/ACM Trans Comput Biol Bioinform; 2009; 6(4):682-8. PubMed ID: 19875865 [TBL] [Abstract][Full Text] [Related]
14. Limits in accuracy and a strategy of RNA structure prediction using experimental information. Wang J; Williams B; Chirasani VR; Krokhotin A; Das R; Dokholyan NV Nucleic Acids Res; 2019 Jun; 47(11):5563-5572. PubMed ID: 31106330 [TBL] [Abstract][Full Text] [Related]
15. RNA Visualization: Relevance and the Current State-of-the-Art Focusing on Pseudoknots. Shabash B; Wiese KC IEEE/ACM Trans Comput Biol Bioinform; 2017; 14(3):696-712. PubMed ID: 26915129 [TBL] [Abstract][Full Text] [Related]
17. FlexStem: improving predictions of RNA secondary structures with pseudoknots by reducing the search space. Chen X; He SM; Bu D; Zhang F; Wang Z; Chen R; Gao W Bioinformatics; 2008 Sep; 24(18):1994-2001. PubMed ID: 18586700 [TBL] [Abstract][Full Text] [Related]
18. INFO-RNA--a server for fast inverse RNA folding satisfying sequence constraints. Busch A; Backofen R Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W310-3. PubMed ID: 17452349 [TBL] [Abstract][Full Text] [Related]
20. A method for aligning RNA secondary structures and its application to RNA motif detection. Liu J; Wang JT; Hu J; Tian B BMC Bioinformatics; 2005 Apr; 6():89. PubMed ID: 15817128 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]