250 related articles for article (PubMed ID: 21565271)
1. BCL::EM-Fit: rigid body fitting of atomic structures into density maps using geometric hashing and real space refinement.
Woetzel N; Lindert S; Stewart PL; Meiler J
J Struct Biol; 2011 Sep; 175(3):264-76. PubMed ID: 21565271
[TBL] [Abstract][Full Text] [Related]
2. A New Protocol for Atomic-Level Protein Structure Modeling and Refinement Using Low-to-Medium Resolution Cryo-EM Density Maps.
Zhang B; Zhang X; Pearce R; Shen HB; Zhang Y
J Mol Biol; 2020 Sep; 432(19):5365-5377. PubMed ID: 32771523
[TBL] [Abstract][Full Text] [Related]
3. A fast mathematical programming procedure for simultaneous fitting of assembly components into cryoEM density maps.
Zhang S; Vasishtan D; Xu M; Topf M; Alber F
Bioinformatics; 2010 Jun; 26(12):i261-8. PubMed ID: 20529915
[TBL] [Abstract][Full Text] [Related]
4. Flexible Fitting of Atomic Models into Cryo-EM Density Maps Guided by Helix Correspondences.
Dou H; Burrows DW; Baker ML; Ju T
Biophys J; 2017 Jun; 112(12):2479-2493. PubMed ID: 28636906
[TBL] [Abstract][Full Text] [Related]
5. Finding rigid bodies in protein structures: Application to flexible fitting into cryoEM maps.
Pandurangan AP; Topf M
J Struct Biol; 2012 Feb; 177(2):520-31. PubMed ID: 22079400
[TBL] [Abstract][Full Text] [Related]
6. Protein structure fitting and refinement guided by cryo-EM density.
Topf M; Lasker K; Webb B; Wolfson H; Chiu W; Sali A
Structure; 2008 Feb; 16(2):295-307. PubMed ID: 18275820
[TBL] [Abstract][Full Text] [Related]
7. Scoring functions for cryoEM density fitting.
Vasishtan D; Topf M
J Struct Biol; 2011 May; 174(2):333-43. PubMed ID: 21296161
[TBL] [Abstract][Full Text] [Related]
8. Building and refining protein models within cryo-electron microscopy density maps based on homology modeling and multiscale structure refinement.
Zhu J; Cheng L; Fang Q; Zhou ZH; Honig B
J Mol Biol; 2010 Apr; 397(3):835-51. PubMed ID: 20109465
[TBL] [Abstract][Full Text] [Related]
9. Automated structure refinement of macromolecular assemblies from cryo-EM maps using Rosetta.
Wang RY; Song Y; Barad BA; Cheng Y; Fraser JS; DiMaio F
Elife; 2016 Sep; 5():. PubMed ID: 27669148
[TBL] [Abstract][Full Text] [Related]
10. ATTRACT-EM: a new method for the computational assembly of large molecular machines using cryo-EM maps.
de Vries SJ; Zacharias M
PLoS One; 2012; 7(12):e49733. PubMed ID: 23251350
[TBL] [Abstract][Full Text] [Related]
11. Inferential optimization for simultaneous fitting of multiple components into a CryoEM map of their assembly.
Lasker K; Topf M; Sali A; Wolfson HJ
J Mol Biol; 2009 Apr; 388(1):180-94. PubMed ID: 19233204
[TBL] [Abstract][Full Text] [Related]
12. Fitting low-resolution cryo-EM maps of proteins using constrained geometric simulations.
Jolley CC; Wells SA; Fromme P; Thorpe MF
Biophys J; 2008 Mar; 94(5):1613-21. PubMed ID: 17993504
[TBL] [Abstract][Full Text] [Related]
13. Cross-validation in cryo-EM-based structural modeling.
Falkner B; Schröder GF
Proc Natl Acad Sci U S A; 2013 May; 110(22):8930-5. PubMed ID: 23674685
[TBL] [Abstract][Full Text] [Related]
14. Structural characterization of components of protein assemblies by comparative modeling and electron cryo-microscopy.
Topf M; Baker ML; John B; Chiu W; Sali A
J Struct Biol; 2005 Feb; 149(2):191-203. PubMed ID: 15681235
[TBL] [Abstract][Full Text] [Related]
15. A core-weighted fitting method for docking atomic structures into low-resolution maps: application to cryo-electron microscopy.
Wu X; Milne JL; Borgnia MJ; Rostapshov AV; Subramaniam S; Brooks BR
J Struct Biol; 2003 Jan; 141(1):63-76. PubMed ID: 12576021
[TBL] [Abstract][Full Text] [Related]
16. FOLD-EM: automated fold recognition in medium- and low-resolution (4-15 Å) electron density maps.
Saha M; Morais MC
Bioinformatics; 2012 Dec; 28(24):3265-73. PubMed ID: 23131460
[TBL] [Abstract][Full Text] [Related]
17. Protein-Protein Modeling Using Cryo-EM Restraints.
Trellet M; van Zundert G; Bonvin AMJJ
Methods Mol Biol; 2020; 2112():145-162. PubMed ID: 32006284
[TBL] [Abstract][Full Text] [Related]
18. Refinement of Atomic Structures Against cryo-EM Maps.
Murshudov GN
Methods Enzymol; 2016; 579():277-305. PubMed ID: 27572731
[TBL] [Abstract][Full Text] [Related]
19. Current approaches for the fitting and refinement of atomic models into cryo-EM maps using CCP-EM.
Nicholls RA; Tykac M; Kovalevskiy O; Murshudov GN
Acta Crystallogr D Struct Biol; 2018 Jun; 74(Pt 6):492-505. PubMed ID: 29872001
[TBL] [Abstract][Full Text] [Related]
20. Interface refinement of low- to medium-resolution Cryo-EM complexes using HADDOCK2.4.
Neijenhuis T; van Keulen SC; Bonvin AMJJ
Structure; 2022 Apr; 30(4):476-484.e3. PubMed ID: 35216656
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]