BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

165 related articles for article (PubMed ID: 21565696)

  • 21. Recognition templates for predicting adenylate-binding sites in proteins.
    Zhao S; Morris GM; Olson AJ; Goodsell DS
    J Mol Biol; 2001 Dec; 314(5):1245-55. PubMed ID: 11743737
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Protein-protein docking with binding site patch prediction and network-based terms enhanced combinatorial scoring.
    Gong X; Wang P; Yang F; Chang S; Liu B; He H; Cao L; Xu X; Li C; Chen W; Wang C
    Proteins; 2010 Nov; 78(15):3150-5. PubMed ID: 20806233
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Importance of molecular computer modeling in anticancer drug development.
    Geromichalos GD
    J BUON; 2007 Sep; 12 Suppl 1():S101-18. PubMed ID: 17935268
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Statistical geometry based prediction of nonsynonymous SNP functional effects using random forest and neuro-fuzzy classifiers.
    Barenboim M; Masso M; Vaisman II; Jamison DC
    Proteins; 2008 Jun; 71(4):1930-9. PubMed ID: 18186470
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Docking prediction using biological information, ZDOCK sampling technique, and clustering guided by the DFIRE statistical energy function.
    Zhang C; Liu S; Zhou Y
    Proteins; 2005 Aug; 60(2):314-8. PubMed ID: 15981255
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Domain-based small molecule binding site annotation.
    Snyder KA; Feldman HJ; Dumontier M; Salama JJ; Hogue CW
    BMC Bioinformatics; 2006 Mar; 7():152. PubMed ID: 16545112
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Evaluation of the searching abilities of HBOP and HBSITE for binding pocket detection.
    Oda A; Yamaotsu N; Hirono S
    J Comput Chem; 2009 Dec; 30(16):2728-37. PubMed ID: 19399761
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Consensus scoring for protein-ligand interactions.
    Feher M
    Drug Discov Today; 2006 May; 11(9-10):421-8. PubMed ID: 16635804
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Identification of cavities on protein surface using multiple computational approaches for drug binding site prediction.
    Zhang Z; Li Y; Lin B; Schroeder M; Huang B
    Bioinformatics; 2011 Aug; 27(15):2083-8. PubMed ID: 21636590
    [TBL] [Abstract][Full Text] [Related]  

  • 30. InCa-SiteFinder: a method for structure-based prediction of inositol and carbohydrate binding sites on proteins.
    Kulharia M; Bridgett SJ; Goody RS; Jackson RM
    J Mol Graph Model; 2009 Oct; 28(3):297-303. PubMed ID: 19762259
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Docking and scoring protein interactions: CAPRI 2009.
    Lensink MF; Wodak SJ
    Proteins; 2010 Nov; 78(15):3073-84. PubMed ID: 20806235
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Structure prediction for CASP7 targets using extensive all-atom refinement with Rosetta@home.
    Das R; Qian B; Raman S; Vernon R; Thompson J; Bradley P; Khare S; Tyka MD; Bhat D; Chivian D; Kim DE; Sheffler WH; Malmström L; Wollacott AM; Wang C; Andre I; Baker D
    Proteins; 2007; 69 Suppl 8():118-28. PubMed ID: 17894356
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Prediction of global and local model quality in CASP7 using Pcons and ProQ.
    Wallner B; Elofsson A
    Proteins; 2007; 69 Suppl 8():184-93. PubMed ID: 17894353
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Protein-binding site prediction based on three-dimensional protein modeling.
    Oh M; Joo K; Lee J
    Proteins; 2009; 77 Suppl 9():152-6. PubMed ID: 19768678
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Prediction of protein subcellular localization.
    Yu CS; Chen YC; Lu CH; Hwang JK
    Proteins; 2006 Aug; 64(3):643-51. PubMed ID: 16752418
    [TBL] [Abstract][Full Text] [Related]  

  • 36. A critical assessment of docking programs and scoring functions.
    Warren GL; Andrews CW; Capelli AM; Clarke B; LaLonde J; Lambert MH; Lindvall M; Nevins N; Semus SF; Senger S; Tedesco G; Wall ID; Woolven JM; Peishoff CE; Head MS
    J Med Chem; 2006 Oct; 49(20):5912-31. PubMed ID: 17004707
    [TBL] [Abstract][Full Text] [Related]  

  • 37. A new test set for validating predictions of protein-ligand interaction.
    Nissink JW; Murray C; Hartshorn M; Verdonk ML; Cole JC; Taylor R
    Proteins; 2002 Dec; 49(4):457-71. PubMed ID: 12402356
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Assessment of CASP7 predictions for template-based modeling targets.
    Kopp J; Bordoli L; Battey JN; Kiefer F; Schwede T
    Proteins; 2007; 69 Suppl 8():38-56. PubMed ID: 17894352
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Predicting functional sites with an automated algorithm suitable for heterogeneous datasets.
    La D; Livesay DR
    BMC Bioinformatics; 2005 May; 6():116. PubMed ID: 15890082
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Ensemble docking of multiple protein structures: considering protein structural variations in molecular docking.
    Huang SY; Zou X
    Proteins; 2007 Feb; 66(2):399-421. PubMed ID: 17096427
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 9.