These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
117 related articles for article (PubMed ID: 21575597)
1. Observations on novel splice junctions from RNA sequencing data. Wang L; Wang X; Wang X; Liang Y; Zhang X Biochem Biophys Res Commun; 2011 Jun; 409(2):299-303. PubMed ID: 21575597 [TBL] [Abstract][Full Text] [Related]
2. Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing. Pan Q; Shai O; Lee LJ; Frey BJ; Blencowe BJ Nat Genet; 2008 Dec; 40(12):1413-5. PubMed ID: 18978789 [TBL] [Abstract][Full Text] [Related]
3. Read-Split-Run: an improved bioinformatics pipeline for identification of genome-wide non-canonical spliced regions using RNA-Seq data. Bai Y; Kinne J; Donham B; Jiang F; Ding L; Hassler JR; Kaufman RJ BMC Genomics; 2016 Aug; 17 Suppl 7(Suppl 7):503. PubMed ID: 27556805 [TBL] [Abstract][Full Text] [Related]
4. Deep RNA sequencing reveals a high frequency of alternative splicing events in the fungus Trichoderma longibrachiatum. Xie BB; Li D; Shi WL; Qin QL; Wang XW; Rong JC; Sun CY; Huang F; Zhang XY; Dong XW; Chen XL; Zhou BC; Zhang YZ; Song XY BMC Genomics; 2015 Feb; 16(1):54. PubMed ID: 25652134 [TBL] [Abstract][Full Text] [Related]
5. Identifying differential alternative splicing events from RNA sequencing data using RNASeq-MATS. Park JW; Tokheim C; Shen S; Xing Y Methods Mol Biol; 2013; 1038():171-9. PubMed ID: 23872975 [TBL] [Abstract][Full Text] [Related]
6. ASGAL: aligning RNA-Seq data to a splicing graph to detect novel alternative splicing events. Denti L; Rizzi R; Beretta S; Vedova GD; Previtali M; Bonizzoni P BMC Bioinformatics; 2018 Nov; 19(1):444. PubMed ID: 30458725 [TBL] [Abstract][Full Text] [Related]
7. Detection, annotation and visualization of alternative splicing from RNA-Seq data with SplicingViewer. Liu Q; Chen C; Shen E; Zhao F; Sun Z; Wu J Genomics; 2012 Mar; 99(3):178-82. PubMed ID: 22226708 [TBL] [Abstract][Full Text] [Related]
8. Global and unbiased detection of splice junctions from RNA-seq data. Ameur A; Wetterbom A; Feuk L; Gyllensten U Genome Biol; 2010; 11(3):R34. PubMed ID: 20236510 [TBL] [Abstract][Full Text] [Related]
9. SNPlice: variants that modulate Intron retention from RNA-sequencing data. Mudvari P; Movassagh M; Kowsari K; Seyfi A; Kokkinaki M; Edwards NJ; Golestaneh N; Horvath A Bioinformatics; 2015 Apr; 31(8):1191-8. PubMed ID: 25481010 [TBL] [Abstract][Full Text] [Related]
10. Human splicing diversity and the extent of unannotated splice junctions across human RNA-seq samples on the Sequence Read Archive. Nellore A; Jaffe AE; Fortin JP; Alquicira-Hernández J; Collado-Torres L; Wang S; Phillips RA; Karbhari N; Hansen KD; Langmead B; Leek JT Genome Biol; 2016 Dec; 17(1):266. PubMed ID: 28038678 [TBL] [Abstract][Full Text] [Related]
11. PASSion: a pattern growth algorithm-based pipeline for splice junction detection in paired-end RNA-Seq data. Zhang Y; Lameijer EW; 't Hoen PA; Ning Z; Slagboom PE; Ye K Bioinformatics; 2012 Feb; 28(4):479-86. PubMed ID: 22219203 [TBL] [Abstract][Full Text] [Related]
12. Opportunities and methods for studying alternative splicing in cancer with RNA-Seq. Feng H; Qin Z; Zhang X Cancer Lett; 2013 Nov; 340(2):179-91. PubMed ID: 23196057 [TBL] [Abstract][Full Text] [Related]
13. RNA sequencing and quantitation using the Helicos Genetic Analysis System. Raz T; Causey M; Jones DR; Kieu A; Letovsky S; Lipson D; Thayer E; Thompson JF; Milos PM Methods Mol Biol; 2011; 733():37-49. PubMed ID: 21431761 [TBL] [Abstract][Full Text] [Related]
14. Detection and quantification of alternative splicing variants using RNA-seq. Bryant DW; Priest HD; Mockler TC Methods Mol Biol; 2012; 883():97-110. PubMed ID: 22589127 [TBL] [Abstract][Full Text] [Related]
15. Analysis of the prostate cancer cell line LNCaP transcriptome using a sequencing-by-synthesis approach. Bainbridge MN; Warren RL; Hirst M; Romanuik T; Zeng T; Go A; Delaney A; Griffith M; Hickenbotham M; Magrini V; Mardis ER; Sadar MD; Siddiqui AS; Marra MA; Jones SJ BMC Genomics; 2006 Sep; 7():246. PubMed ID: 17010196 [TBL] [Abstract][Full Text] [Related]
16. A procedure for identifying homologous alternative splicing events. Talavera D; Hospital A; Orozco M; de la Cruz X BMC Bioinformatics; 2007 Jul; 8():260. PubMed ID: 17640387 [TBL] [Abstract][Full Text] [Related]
18. Exploration of alternative splicing events in ten different grapevine cultivars. Potenza E; Racchi ML; Sterck L; Coller E; Asquini E; Tosatto SC; Velasco R; Van de Peer Y; Cestaro A BMC Genomics; 2015 Sep; 16(1):706. PubMed ID: 26380971 [TBL] [Abstract][Full Text] [Related]
19. Detection of splice junctions from paired-end RNA-seq data by SpliceMap. Au KF; Jiang H; Lin L; Xing Y; Wong WH Nucleic Acids Res; 2010 Aug; 38(14):4570-8. PubMed ID: 20371516 [TBL] [Abstract][Full Text] [Related]
20. Discover hidden splicing variations by mapping personal transcriptomes to personal genomes. Stein S; Lu ZX; Bahrami-Samani E; Park JW; Xing Y Nucleic Acids Res; 2015 Dec; 43(22):10612-22. PubMed ID: 26578562 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]