180 related articles for article (PubMed ID: 21593129)
1. TT2NE: a novel algorithm to predict RNA secondary structures with pseudoknots.
Bon M; Orland H
Nucleic Acids Res; 2011 Aug; 39(14):e93. PubMed ID: 21593129
[TBL] [Abstract][Full Text] [Related]
2. McGenus: a Monte Carlo algorithm to predict RNA secondary structures with pseudoknots.
Bon M; Micheletti C; Orland H
Nucleic Acids Res; 2013 Feb; 41(3):1895-900. PubMed ID: 23248008
[TBL] [Abstract][Full Text] [Related]
3. A fast and robust iterative algorithm for prediction of RNA pseudoknotted secondary structures.
Jabbari H; Condon A
BMC Bioinformatics; 2014 May; 15():147. PubMed ID: 24884954
[TBL] [Abstract][Full Text] [Related]
4. DotKnot: pseudoknot prediction using the probability dot plot under a refined energy model.
Sperschneider J; Datta A
Nucleic Acids Res; 2010 Apr; 38(7):e103. PubMed ID: 20123730
[TBL] [Abstract][Full Text] [Related]
5. IPknot: fast and accurate prediction of RNA secondary structures with pseudoknots using integer programming.
Sato K; Kato Y; Hamada M; Akutsu T; Asai K
Bioinformatics; 2011 Jul; 27(13):i85-93. PubMed ID: 21685106
[TBL] [Abstract][Full Text] [Related]
6. HotKnots: heuristic prediction of RNA secondary structures including pseudoknots.
Ren J; Rastegari B; Condon A; Hoos HH
RNA; 2005 Oct; 11(10):1494-504. PubMed ID: 16199760
[TBL] [Abstract][Full Text] [Related]
7. Novel and efficient RNA secondary structure prediction using hierarchical folding.
Jabbari H; Condon A; Zhao S
J Comput Biol; 2008 Mar; 15(2):139-63. PubMed ID: 18312147
[TBL] [Abstract][Full Text] [Related]
8. Pair stochastic tree adjoining grammars for aligning and predicting pseudoknot RNA structures.
Matsui H; Sato K; Sakakibara Y
Proc IEEE Comput Syst Bioinform Conf; 2004; ():290-9. PubMed ID: 16448022
[TBL] [Abstract][Full Text] [Related]
9. An iterated loop matching approach to the prediction of RNA secondary structures with pseudoknots.
Ruan J; Stormo GD; Zhang W
Bioinformatics; 2004 Jan; 20(1):58-66. PubMed ID: 14693809
[TBL] [Abstract][Full Text] [Related]
10. An efficient algorithm for planar drawing of RNA structures with pseudoknots of any type.
Byun Y; Han K
J Bioinform Comput Biol; 2016 Jun; 14(3):1650009. PubMed ID: 26932273
[TBL] [Abstract][Full Text] [Related]
11. ProbKnot: fast prediction of RNA secondary structure including pseudoknots.
Bellaousov S; Mathews DH
RNA; 2010 Oct; 16(10):1870-80. PubMed ID: 20699301
[TBL] [Abstract][Full Text] [Related]
12. [An iterative method for prediction of RNA secondary structures including pseudoknots based on minimum of free energy and covariance].
Wang ZX; Luo ZG; Guan NY; Yan FM; Jin X; Zhang W
Yi Chuan; 2007 Jul; 29(7):889-97. PubMed ID: 17646157
[TBL] [Abstract][Full Text] [Related]
13. Heuristic RNA pseudoknot prediction including intramolecular kissing hairpins.
Sperschneider J; Datta A; Wise MJ
RNA; 2011 Jan; 17(1):27-38. PubMed ID: 21098139
[TBL] [Abstract][Full Text] [Related]
14. FlexStem: improving predictions of RNA secondary structures with pseudoknots by reducing the search space.
Chen X; He SM; Bu D; Zhang F; Wang Z; Chen R; Gao W
Bioinformatics; 2008 Sep; 24(18):1994-2001. PubMed ID: 18586700
[TBL] [Abstract][Full Text] [Related]
15. Direct Inference of Base-Pairing Probabilities with Neural Networks Improves Prediction of RNA Secondary Structures with Pseudoknots.
Akiyama M; Sakakibara Y; Sato K
Genes (Basel); 2022 Nov; 13(11):. PubMed ID: 36421829
[TBL] [Abstract][Full Text] [Related]
16. Thermodynamics of RNA structures by Wang-Landau sampling.
Lou F; Clote P
Bioinformatics; 2010 Jun; 26(12):i278-86. PubMed ID: 20529917
[TBL] [Abstract][Full Text] [Related]
17. A dynamic programming algorithm for RNA structure prediction including pseudoknots.
Rivas E; Eddy SR
J Mol Biol; 1999 Feb; 285(5):2053-68. PubMed ID: 9925784
[TBL] [Abstract][Full Text] [Related]
18. An efficient simulated annealing algorithm for the RNA secondary structure prediction with Pseudoknots.
Kai Z; Yuting W; Yulin L; Jun L; Juanjuan H
BMC Genomics; 2019 Dec; 20(Suppl 13):979. PubMed ID: 31881969
[TBL] [Abstract][Full Text] [Related]
19. An RNA folding algorithm including pseudoknots based on dynamic weighted matching.
Liu H; Xu D; Shao J; Wang Y
Comput Biol Chem; 2006 Feb; 30(1):72-6. PubMed ID: 16321572
[TBL] [Abstract][Full Text] [Related]
20. PseudoViewer: automatic visualization of RNA pseudoknots.
Han K; Lee Y; Kim W
Bioinformatics; 2002; 18 Suppl 1():S321-8. PubMed ID: 12169562
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
