BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

202 related articles for article (PubMed ID: 21596792)

  • 1. linkcomm: an R package for the generation, visualization, and analysis of link communities in networks of arbitrary size and type.
    Kalinka AT; Tomancak P
    Bioinformatics; 2011 Jul; 27(14):2011-2. PubMed ID: 21596792
    [TBL] [Abstract][Full Text] [Related]  

  • 2. CePa: an R package for finding significant pathways weighted by multiple network centralities.
    Gu Z; Wang J
    Bioinformatics; 2013 Mar; 29(5):658-60. PubMed ID: 23314125
    [TBL] [Abstract][Full Text] [Related]  

  • 3. wTO: an R package for computing weighted topological overlap and a consensus network with integrated visualization tool.
    Gysi DM; Voigt A; Fragoso TM; Almaas E; Nowick K
    BMC Bioinformatics; 2018 Oct; 19(1):392. PubMed ID: 30355288
    [TBL] [Abstract][Full Text] [Related]  

  • 4. mAPKL: R/ Bioconductor package for detecting gene exemplars and revealing their characteristics.
    Sakellariou A; Spyrou G
    BMC Bioinformatics; 2015 Sep; 16(1):291. PubMed ID: 26374744
    [TBL] [Abstract][Full Text] [Related]  

  • 5. PCIT: an R package for weighted gene co-expression networks based on partial correlation and information theory approaches.
    Watson-Haigh NS; Kadarmideen HN; Reverter A
    Bioinformatics; 2010 Feb; 26(3):411-3. PubMed ID: 20007253
    [TBL] [Abstract][Full Text] [Related]  

  • 6. KODAMA: an R package for knowledge discovery and data mining.
    Cacciatore S; Tenori L; Luchinat C; Bennett PR; MacIntyre DA
    Bioinformatics; 2017 Feb; 33(4):621-623. PubMed ID: 27993774
    [TBL] [Abstract][Full Text] [Related]  

  • 7. CINNA: an R/CRAN package to decipher Central Informative Nodes in Network Analysis.
    Ashtiani M; Mirzaie M; Jafari M
    Bioinformatics; 2019 Apr; 35(8):1436-1437. PubMed ID: 30239607
    [TBL] [Abstract][Full Text] [Related]  

  • 8. RevEcoR: an R package for the reverse ecology analysis of microbiomes.
    Cao Y; Wang Y; Zheng X; Li F; Bo X
    BMC Bioinformatics; 2016 Jul; 17(1):294. PubMed ID: 27473172
    [TBL] [Abstract][Full Text] [Related]  

  • 9. NFP: An R Package for Characterizing and Comparing of Annotated Biological Networks.
    Cao Y; Xu W; Niu C; Bo X; Li F
    Biomed Res Int; 2017; 2017():7457131. PubMed ID: 28280740
    [TBL] [Abstract][Full Text] [Related]  

  • 10. BoolNet--an R package for generation, reconstruction and analysis of Boolean networks.
    Müssel C; Hopfensitz M; Kestler HA
    Bioinformatics; 2010 May; 26(10):1378-80. PubMed ID: 20378558
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Multi-resolution visualization and analysis of biomolecular networks through hierarchical community detection and web-based graphical tools.
    Perlasca P; Frasca M; Ba CT; Gliozzo J; Notaro M; Pennacchioni M; Valentini G; Mesiti M
    PLoS One; 2020; 15(12):e0244241. PubMed ID: 33351828
    [TBL] [Abstract][Full Text] [Related]  

  • 12. penalizedSVM: a R-package for feature selection SVM classification.
    Becker N; Werft W; Toedt G; Lichter P; Benner A
    Bioinformatics; 2009 Jul; 25(13):1711-2. PubMed ID: 19398451
    [TBL] [Abstract][Full Text] [Related]  

  • 13. SIMoNe: Statistical Inference for MOdular NEtworks.
    Chiquet J; Smith A; Grasseau G; Matias C; Ambroise C
    Bioinformatics; 2009 Feb; 25(3):417-8. PubMed ID: 19073589
    [TBL] [Abstract][Full Text] [Related]  

  • 14. MALDIquant: a versatile R package for the analysis of mass spectrometry data.
    Gibb S; Strimmer K
    Bioinformatics; 2012 Sep; 28(17):2270-1. PubMed ID: 22796955
    [TBL] [Abstract][Full Text] [Related]  

  • 15. netboxr: Automated discovery of biological process modules by network analysis in R.
    Liu EM; Luna A; Dong G; Sander C
    PLoS One; 2020; 15(11):e0234669. PubMed ID: 33137091
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Spathial: an R package for the evolutionary analysis of biological data.
    Gardini E; Giorgi FM; Decherchi S; Cavalli A
    Bioinformatics; 2020 Nov; 36(17):4664-4667. PubMed ID: 32437522
    [TBL] [Abstract][Full Text] [Related]  

  • 17. NAP: The Network Analysis Profiler, a web tool for easier topological analysis and comparison of medium-scale biological networks.
    Theodosiou T; Efstathiou G; Papanikolaou N; Kyrpides NC; Bagos PG; Iliopoulos I; Pavlopoulos GA
    BMC Res Notes; 2017 Jul; 10(1):278. PubMed ID: 28705239
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Biological Network Inference and analysis using SEBINI and CABIN.
    Taylor R; Singhal M
    Methods Mol Biol; 2009; 541():551-76. PubMed ID: 19381531
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Fast network centrality analysis using GPUs.
    Shi Z; Zhang B
    BMC Bioinformatics; 2011 May; 12():149. PubMed ID: 21569426
    [TBL] [Abstract][Full Text] [Related]  

  • 20. PiNGO: a Cytoscape plugin to find candidate genes in biological networks.
    Smoot M; Ono K; Ideker T; Maere S
    Bioinformatics; 2011 Apr; 27(7):1030-1. PubMed ID: 21278188
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.