These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

153 related articles for article (PubMed ID: 21601080)

  • 1. Sequence-specificity and energy landscapes of DNA-binding molecules.
    Tietjen JR; Donato LJ; Bhimisaria D; Ansari AZ
    Methods Enzymol; 2011; 497():3-30. PubMed ID: 21601080
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Specificity landscapes of DNA binding molecules elucidate biological function.
    Carlson CD; Warren CL; Hauschild KE; Ozers MS; Qadir N; Bhimsaria D; Lee Y; Cerrina F; Ansari AZ
    Proc Natl Acad Sci U S A; 2010 Mar; 107(10):4544-9. PubMed ID: 20176964
    [TBL] [Abstract][Full Text] [Related]  

  • 3. CSI-Tree: a regression tree approach for modeling binding properties of DNA-binding molecules based on cognate site identification (CSI) data.
    Keleş S; Warren CL; Carlson CD; Ansari AZ
    Nucleic Acids Res; 2008 Jun; 36(10):3171-84. PubMed ID: 18411210
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Nonconsensus Protein Binding to Repetitive DNA Sequence Elements Significantly Affects Eukaryotic Genomes.
    Afek A; Cohen H; Barber-Zucker S; Gordân R; Lukatsky DB
    PLoS Comput Biol; 2015 Aug; 11(8):e1004429. PubMed ID: 26285121
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Comprehensive, high-resolution binding energy landscapes reveal context dependencies of transcription factor binding.
    Le DD; Shimko TC; Aditham AK; Keys AM; Longwell SA; Orenstein Y; Fordyce PM
    Proc Natl Acad Sci U S A; 2018 Apr; 115(16):E3702-E3711. PubMed ID: 29588420
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Robust mixture model clustering of DNA binding sites.
    Liu S; Song Q; Cao A; Yang X; Wu Y
    Conf Proc IEEE Eng Med Biol Soc; 2006; 2006():2032-5. PubMed ID: 17946928
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Determining DNA sequence specificity of natural and artificial transcription factors by cognate site identifier analysis.
    Ozers MS; Warren CL; Ansari AZ
    Methods Mol Biol; 2009; 544():637-53. PubMed ID: 19488729
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Interchange of DNA-binding modes in the deformed and ultrabithorax homeodomains: a structural role for the N-terminal arm.
    Frazee RW; Taylor JA; Tullius TD
    J Mol Biol; 2002 Nov; 323(4):665-83. PubMed ID: 12419257
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Identifying transcription factor binding sites through Markov chain optimization.
    Ellrott K; Yang C; Sladek FM; Jiang T
    Bioinformatics; 2002; 18 Suppl 2():S100-9. PubMed ID: 12385991
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Computational Methods for Analysis of the DNA-Binding Preferences of Cys2His2 Zinc-Finger Proteins.
    Doğan B; Najafabadi HS
    Methods Mol Biol; 2018; 1867():15-28. PubMed ID: 30155812
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Defining the sequence-recognition profile of DNA-binding molecules.
    Warren CL; Kratochvil NC; Hauschild KE; Foister S; Brezinski ML; Dervan PB; Phillips GN; Ansari AZ
    Proc Natl Acad Sci U S A; 2006 Jan; 103(4):867-72. PubMed ID: 16418267
    [TBL] [Abstract][Full Text] [Related]  

  • 12. ChIPulate: A comprehensive ChIP-seq simulation pipeline.
    Datta V; Hannenhalli S; Siddharthan R
    PLoS Comput Biol; 2019 Mar; 15(3):e1006921. PubMed ID: 30897079
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Combining microarray and genomic data to predict DNA binding motifs.
    Mao L; Mackenzie C; Roh JH; Eraso JM; Kaplan S; Resat H
    Microbiology (Reading); 2005 Oct; 151(Pt 10):3197-3213. PubMed ID: 16207904
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Protein-DNA binding specificity predictions with structural models.
    Morozov AV; Havranek JJ; Baker D; Siggia ED
    Nucleic Acids Res; 2005; 33(18):5781-98. PubMed ID: 16246914
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Integrated structural biology to unravel molecular mechanisms of protein-RNA recognition.
    Schlundt A; Tants JN; Sattler M
    Methods; 2017 Apr; 118-119():119-136. PubMed ID: 28315749
    [TBL] [Abstract][Full Text] [Related]  

  • 16. High-throughput SELEX SAGE method for quantitative modeling of transcription-factor binding sites.
    Roulet E; Busso S; Camargo AA; Simpson AJ; Mermod N; Bucher P
    Nat Biotechnol; 2002 Aug; 20(8):831-5. PubMed ID: 12101405
    [TBL] [Abstract][Full Text] [Related]  

  • 17. What are DNA sequence motifs?
    D'haeseleer P
    Nat Biotechnol; 2006 Apr; 24(4):423-5. PubMed ID: 16601727
    [TBL] [Abstract][Full Text] [Related]  

  • 18. DIVERSITY in binding, regulation, and evolution revealed from high-throughput ChIP.
    Mitra S; Biswas A; Narlikar L
    PLoS Comput Biol; 2018 Apr; 14(4):e1006090. PubMed ID: 29684008
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Predicting transcription factor specificity with all-atom models.
    Rahi SJ; Virnau P; Mirny LA; Kardar M
    Nucleic Acids Res; 2008 Nov; 36(19):6209-17. PubMed ID: 18829719
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Integration of bioinformatics and computational biology to understand protein-DNA recognition mechanism.
    Sarai A; Siebers J; Selvaraj S; Gromiha MM; Kono H
    J Bioinform Comput Biol; 2005 Feb; 3(1):169-83. PubMed ID: 15751119
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.