These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

194 related articles for article (PubMed ID: 21605466)

  • 1. Mapping the distribution of packing topologies within protein interiors shows predominant preference for specific packing motifs.
    Basu S; Bhattacharyya D; Banerjee R
    BMC Bioinformatics; 2011 May; 12():195. PubMed ID: 21605466
    [TBL] [Abstract][Full Text] [Related]  

  • 2. The jigsaw puzzle model: search for conformational specificity in protein interiors.
    Banerjee R; Sen M; Bhattacharya D; Saha P
    J Mol Biol; 2003 Oct; 333(1):211-26. PubMed ID: 14516754
    [TBL] [Abstract][Full Text] [Related]  

  • 3. An amino acid code for β-sheet packing structure.
    Joo H; Tsai J
    Proteins; 2014 Sep; 82(9):2128-40. PubMed ID: 24668690
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Characterizing the regularity of tetrahedral packing motifs in protein tertiary structure.
    Day R; Lennox KP; Dahl DB; Vannucci M; Tsai JW
    Bioinformatics; 2010 Dec; 26(24):3059-66. PubMed ID: 21047817
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Self-complementarity within proteins: bridging the gap between binding and folding.
    Basu S; Bhattacharyya D; Banerjee R
    Biophys J; 2012 Jun; 102(11):2605-14. PubMed ID: 22713576
    [TBL] [Abstract][Full Text] [Related]  

  • 6. An amino acid code to define a protein's tertiary packing surface.
    Fraga KJ; Joo H; Tsai J
    Proteins; 2016 Feb; 84(2):201-16. PubMed ID: 26575337
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Distance-based identification of structure motifs in proteins using constrained frequent subgraph mining.
    Huan J; Bandyopadhyay D; Prins J; Snoeyink J; Tropsha A; Wang W
    Comput Syst Bioinformatics Conf; 2006; ():227-38. PubMed ID: 17369641
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Helix-sheet packing in proteins.
    Hu C; Koehl P
    Proteins; 2010 May; 78(7):1736-47. PubMed ID: 20186972
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Six Rossmannoid folds, including the Class I aminoacyl-tRNA synthetases, share a partial core with the anti-codon-binding domain of a Class II aminoacyl-tRNA synthetase.
    Cammer S; Carter CW
    Bioinformatics; 2010 Mar; 26(6):709-14. PubMed ID: 20130031
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Packing in protein cores.
    Gaines JC; Clark AH; Regan L; O'Hern CS
    J Phys Condens Matter; 2017 Jul; 29(29):293001. PubMed ID: 28557791
    [TBL] [Abstract][Full Text] [Related]  

  • 11. The protein-folding problem: the native fold determines packing, but does packing determine the native fold?
    Behe MJ; Lattman EE; Rose GD
    Proc Natl Acad Sci U S A; 1991 May; 88(10):4195-9. PubMed ID: 2034665
    [TBL] [Abstract][Full Text] [Related]  

  • 12. The anatomy of protein beta-sheet topology.
    Zhang C; Kim SH
    J Mol Biol; 2000 Jun; 299(4):1075-89. PubMed ID: 10843859
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Helix-packing motifs in membrane proteins.
    Walters RF; DeGrado WF
    Proc Natl Acad Sci U S A; 2006 Sep; 103(37):13658-63. PubMed ID: 16954199
    [TBL] [Abstract][Full Text] [Related]  

  • 14. The crystal structure of a mutant protein with altered but improved hydrophobic core packing.
    Lim WA; Hodel A; Sauer RT; Richards FM
    Proc Natl Acad Sci U S A; 1994 Jan; 91(1):423-7. PubMed ID: 8278404
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Physicochemical evaluation of protein folds predicted by threading.
    Kinjo AR; Kidera A; Nakamura H; Nishikawa K
    Eur Biophys J; 2001; 30(1):1-10. PubMed ID: 11372527
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Protein-protein interfaces: architectures and interactions in protein-protein interfaces and in protein cores. Their similarities and differences.
    Tsai CJ; Lin SL; Wolfson HJ; Nussinov R
    Crit Rev Biochem Mol Biol; 1996 Apr; 31(2):127-52. PubMed ID: 8740525
    [TBL] [Abstract][Full Text] [Related]  

  • 17. An amino acid code for irregular and mixed protein packing.
    Joo H; Chavan AG; Fraga KJ; Tsai J
    Proteins; 2015 Dec; 83(12):2147-61. PubMed ID: 26370334
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Comparing graph representations of protein structure for mining family-specific residue-based packing motifs.
    Huan J; Bandyopadhyay D; Wang W; Snoeyink J; Prins J; Tropsha A
    J Comput Biol; 2005; 12(6):657-71. PubMed ID: 16108709
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Effects of side-chain packing on the formation of secondary structures in protein folding.
    Yasuda S; Yoshidome T; Oshima H; Kodama R; Harano Y; Kinoshita M
    J Chem Phys; 2010 Feb; 132(6):065105. PubMed ID: 20151761
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Core side-chain packing and backbone conformation in Lpp-56 coiled-coil mutants.
    Liu J; Cao W; Lu M
    J Mol Biol; 2002 May; 318(3):877-88. PubMed ID: 12054830
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.