These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

156 related articles for article (PubMed ID: 21609452)

  • 1. Linear and non-linear dependencies between copy number aberrations and mRNA expression reveal distinct molecular pathways in breast cancer.
    Solvang HK; Lingjærde OC; Frigessi A; Børresen-Dale AL; Kristensen VN
    BMC Bioinformatics; 2011 May; 12():197. PubMed ID: 21609452
    [TBL] [Abstract][Full Text] [Related]  

  • 2. An integrative genomic and transcriptomic analysis reveals molecular pathways and networks regulated by copy number aberrations in basal-like, HER2 and luminal cancers.
    Natrajan R; Weigelt B; Mackay A; Geyer FC; Grigoriadis A; Tan DS; Jones C; Lord CJ; Vatcheva R; Rodriguez-Pinilla SM; Palacios J; Ashworth A; Reis-Filho JS
    Breast Cancer Res Treat; 2010 Jun; 121(3):575-89. PubMed ID: 19688261
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Molecular characterization of breast cancer with high-resolution oligonucleotide comparative genomic hybridization array.
    Andre F; Job B; Dessen P; Tordai A; Michiels S; Liedtke C; Richon C; Yan K; Wang B; Vassal G; Delaloge S; Hortobagyi GN; Symmans WF; Lazar V; Pusztai L
    Clin Cancer Res; 2009 Jan; 15(2):441-51. PubMed ID: 19147748
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Comparison of the Agilent, ROMA/NimbleGen and Illumina platforms for classification of copy number alterations in human breast tumors.
    Baumbusch LO; Aarøe J; Johansen FE; Hicks J; Sun H; Bruhn L; Gunderson K; Naume B; Kristensen VN; Liestøl K; Børresen-Dale AL; Lingjaerde OC
    BMC Genomics; 2008 Aug; 9():379. PubMed ID: 18691401
    [TBL] [Abstract][Full Text] [Related]  

  • 5. The use of ultra-dense array CGH analysis for the discovery of micro-copy number alterations and gene fusions in the cancer genome.
    Przybytkowski E; Ferrario C; Basik M
    BMC Med Genomics; 2011 Jan; 4():16. PubMed ID: 21272361
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Micro-scale genomic DNA copy number aberrations as another means of mutagenesis in breast cancer.
    Chao HH; He X; Parker JS; Zhao W; Perou CM
    PLoS One; 2012; 7(12):e51719. PubMed ID: 23284754
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Integration of transcript expression, copy number and LOH analysis of infiltrating ductal carcinoma of the breast.
    Hawthorn L; Luce J; Stein L; Rothschild J
    BMC Cancer; 2010 Aug; 10():460. PubMed ID: 20799942
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Identifying in-trans process associated genes in breast cancer by integrated analysis of copy number and expression data.
    Aure MR; Steinfeld I; Baumbusch LO; Liestøl K; Lipson D; Nyberg S; Naume B; Sahlberg KK; Kristensen VN; Børresen-Dale AL; Lingjærde OC; Yakhini Z
    PLoS One; 2013; 8(1):e53014. PubMed ID: 23382830
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Genomic profiling by array comparative genomic hybridization reveals novel DNA copy number changes in breast phyllodes tumours.
    Kuijper A; Snijders AM; Berns EM; Kuenen-Boumeester V; van der Wall E; Albertson DG; van Diest PJ
    Cell Oncol; 2009; 31(1):31-9. PubMed ID: 19096148
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Segmented regression, a versatile tool to analyze mRNA levels in relation to DNA copy number aberrations.
    Nemes S; Parris TZ; Danielsson A; Kannius-Janson M; Jonasson JM; Steineck G; Helou K
    Genes Chromosomes Cancer; 2012 Jan; 51(1):77-82. PubMed ID: 22034095
    [TBL] [Abstract][Full Text] [Related]  

  • 11. A statistical method to detect chromosomal regions with DNA copy number alterations using SNP-array-based CGH data.
    Lai Y; Zhao H
    Comput Biol Chem; 2005 Feb; 29(1):47-54. PubMed ID: 15680585
    [TBL] [Abstract][Full Text] [Related]  

  • 12. High-resolution genomic profiles of breast cancer cell lines assessed by tiling BAC array comparative genomic hybridization.
    Jönsson G; Staaf J; Olsson E; Heidenblad M; Vallon-Christersson J; Osoegawa K; de Jong P; Oredsson S; Ringnér M; Höglund M; Borg A
    Genes Chromosomes Cancer; 2007 Jun; 46(6):543-58. PubMed ID: 17334996
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Distinct patterns of DNA copy number alteration are associated with different clinicopathological features and gene-expression subtypes of breast cancer.
    Bergamaschi A; Kim YH; Wang P; Sørlie T; Hernandez-Boussard T; Lonning PE; Tibshirani R; Børresen-Dale AL; Pollack JR
    Genes Chromosomes Cancer; 2006 Nov; 45(11):1033-40. PubMed ID: 16897746
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Microarray analysis reveals a major direct role of DNA copy number alteration in the transcriptional program of human breast tumors.
    Pollack JR; Sørlie T; Perou CM; Rees CA; Jeffrey SS; Lonning PE; Tibshirani R; Botstein D; Børresen-Dale AL; Brown PO
    Proc Natl Acad Sci U S A; 2002 Oct; 99(20):12963-8. PubMed ID: 12297621
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Breast tumor copy number aberration phenotypes and genomic instability.
    Fridlyand J; Snijders AM; Ylstra B; Li H; Olshen A; Segraves R; Dairkee S; Tokuyasu T; Ljung BM; Jain AN; McLennan J; Ziegler J; Chin K; Devries S; Feiler H; Gray JW; Waldman F; Pinkel D; Albertson DG
    BMC Cancer; 2006 Apr; 6():96. PubMed ID: 16620391
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Integrated analysis of gene expression, CpG island methylation, and gene copy number in breast cancer cells by deep sequencing.
    Sun Z; Asmann YW; Kalari KR; Bot B; Eckel-Passow JE; Baker TR; Carr JM; Khrebtukova I; Luo S; Zhang L; Schroth GP; Perez EA; Thompson EA
    PLoS One; 2011 Feb; 6(2):e17490. PubMed ID: 21364760
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Gene fusions associated with recurrent amplicons represent a class of passenger aberrations in breast cancer.
    Kalyana-Sundaram S; Shankar S; Deroo S; Iyer MK; Palanisamy N; Chinnaiyan AM; Kumar-Sinha C
    Neoplasia; 2012 Aug; 14(8):702-8. PubMed ID: 22952423
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A systematic comparison of copy number alterations in four types of female cancer.
    Kaveh F; Baumbusch LO; Nebdal D; Børresen-Dale AL; Lingjærde OC; Edvardsen H; Kristensen VN; Solvang HK
    BMC Cancer; 2016 Nov; 16(1):913. PubMed ID: 27876019
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Nonparametric testing for DNA copy number induced differential mRNA gene expression.
    van Wieringen WN; van de Wiel MA
    Biometrics; 2009 Mar; 65(1):19-29. PubMed ID: 18479479
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Clinical array-based karyotyping of breast cancer with equivocal HER2 status resolves gene copy number and reveals chromosome 17 complexity.
    Gunn S; Yeh IT; Lytvak I; Tirtorahardjo B; Dzidic N; Zadeh S; Kim J; McCaskill C; Lim L; Gorre M; Mohammed M
    BMC Cancer; 2010 Jul; 10():396. PubMed ID: 20667129
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.