These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

377 related articles for article (PubMed ID: 21622962)

  • 21. Peptiderive server: derive peptide inhibitors from protein-protein interactions.
    Sedan Y; Marcu O; Lyskov S; Schueler-Furman O
    Nucleic Acids Res; 2016 Jul; 44(W1):W536-41. PubMed ID: 27141963
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Flexible docking of peptides to proteins using CABS-dock.
    Kurcinski M; Badaczewska-Dawid A; Kolinski M; Kolinski A; Kmiecik S
    Protein Sci; 2020 Jan; 29(1):211-222. PubMed ID: 31682301
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Modeling peptide-protein interactions.
    London N; Raveh B; Schueler-Furman O
    Methods Mol Biol; 2012; 857():375-98. PubMed ID: 22323231
    [TBL] [Abstract][Full Text] [Related]  

  • 24. AMMOS2: a web server for protein-ligand-water complexes refinement via molecular mechanics.
    Labbé CM; Pencheva T; Jereva D; Desvillechabrol D; Becot J; Villoutreix BO; Pajeva I; Miteva MA
    Nucleic Acids Res; 2017 Jul; 45(W1):W350-W355. PubMed ID: 28486703
    [TBL] [Abstract][Full Text] [Related]  

  • 25. The pepATTRACT web server for blind, large-scale peptide-protein docking.
    de Vries SJ; Rey J; Schindler CEM; Zacharias M; Tuffery P
    Nucleic Acids Res; 2017 Jul; 45(W1):W361-W364. PubMed ID: 28460116
    [TBL] [Abstract][Full Text] [Related]  

  • 26. PepCrawler: a fast RRT-based algorithm for high-resolution refinement and binding affinity estimation of peptide inhibitors.
    Donsky E; Wolfson HJ
    Bioinformatics; 2011 Oct; 27(20):2836-42. PubMed ID: 21880702
    [TBL] [Abstract][Full Text] [Related]  

  • 27. GalaxyPepDock: a protein-peptide docking tool based on interaction similarity and energy optimization.
    Lee H; Heo L; Lee MS; Seok C
    Nucleic Acids Res; 2015 Jul; 43(W1):W431-5. PubMed ID: 25969449
    [TBL] [Abstract][Full Text] [Related]  

  • 28. PepSite: prediction of peptide-binding sites from protein surfaces.
    Trabuco LG; Lise S; Petsalaki E; Russell RB
    Nucleic Acids Res; 2012 Jul; 40(Web Server issue):W423-7. PubMed ID: 22600738
    [TBL] [Abstract][Full Text] [Related]  

  • 29. MDockPeP: An ab-initio protein-peptide docking server.
    Xu X; Yan C; Zou X
    J Comput Chem; 2018 Oct; 39(28):2409-2413. PubMed ID: 30368849
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Information-driven modeling of protein-peptide complexes.
    Trellet M; Melquiond AS; Bonvin AM
    Methods Mol Biol; 2015; 1268():221-39. PubMed ID: 25555727
    [TBL] [Abstract][Full Text] [Related]  

  • 31. PEP-SiteFinder: a tool for the blind identification of peptide binding sites on protein surfaces.
    Saladin A; Rey J; Thévenet P; Zacharias M; Moroy G; Tufféry P
    Nucleic Acids Res; 2014 Jul; 42(Web Server issue):W221-6. PubMed ID: 24803671
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Serverification of molecular modeling applications: the Rosetta Online Server that Includes Everyone (ROSIE).
    Lyskov S; Chou FC; Conchúir SÓ; Der BS; Drew K; Kuroda D; Xu J; Weitzner BD; Renfrew PD; Sripakdeevong P; Borgo B; Havranek JJ; Kuhlman B; Kortemme T; Bonneau R; Gray JJ; Das R
    PLoS One; 2013; 8(5):e63906. PubMed ID: 23717507
    [TBL] [Abstract][Full Text] [Related]  

  • 33. PepComposer: computational design of peptides binding to a given protein surface.
    Obarska-Kosinska A; Iacoangeli A; Lepore R; Tramontano A
    Nucleic Acids Res; 2016 Jul; 44(W1):W522-8. PubMed ID: 27131789
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Matching protein surface structural patches for high-resolution blind peptide docking.
    Khramushin A; Ben-Aharon Z; Tsaban T; Varga JK; Avraham O; Schueler-Furman O
    Proc Natl Acad Sci U S A; 2022 May; 119(18):e2121153119. PubMed ID: 35482919
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Modeling of protein-peptide interactions using the CABS-dock web server for binding site search and flexible docking.
    Blaszczyk M; Kurcinski M; Kouza M; Wieteska L; Debinski A; Kolinski A; Kmiecik S
    Methods; 2016 Jan; 93():72-83. PubMed ID: 26165956
    [TBL] [Abstract][Full Text] [Related]  

  • 36. PepBuild: a web server for building structure data of peptides/proteins.
    Singh B
    Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W559-61. PubMed ID: 15215449
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Detection of Peptide-Binding Sites on Protein Surfaces Using the Peptimap Server.
    Bohnuud T; Jones G; Schueler-Furman O; Kozakov D
    Methods Mol Biol; 2017; 1561():11-20. PubMed ID: 28236230
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Protein Interaction Z Score Assessment (PIZSA): an empirical scoring scheme for evaluation of protein-protein interactions.
    Roy AA; Dhawanjewar AS; Sharma P; Singh G; Madhusudhan MS
    Nucleic Acids Res; 2019 Jul; 47(W1):W331-W337. PubMed ID: 31114890
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Modeling protein-protein, protein-peptide, and protein-oligosaccharide complexes: CAPRI 7th edition.
    Lensink MF; Nadzirin N; Velankar S; Wodak SJ
    Proteins; 2020 Aug; 88(8):916-938. PubMed ID: 31886916
    [TBL] [Abstract][Full Text] [Related]  

  • 40. PRISM: a web server and repository for prediction of protein-protein interactions and modeling their 3D complexes.
    Baspinar A; Cukuroglu E; Nussinov R; Keskin O; Gursoy A
    Nucleic Acids Res; 2014 Jul; 42(Web Server issue):W285-9. PubMed ID: 24829450
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 19.