159 related articles for article (PubMed ID: 21666247)
1. Amino acid interaction preferences in helical membrane proteins.
Jha AN; Vishveshwara S; Banavar JR
Protein Eng Des Sel; 2011 Aug; 24(8):579-88. PubMed ID: 21666247
[TBL] [Abstract][Full Text] [Related]
2. Lipophobicity and the residue environments of the transmembrane alpha-helical bundle.
Mokrab Y; Stevens TJ; Mizuguchi K
Proteins; 2009 Jan; 74(1):32-49. PubMed ID: 18561171
[TBL] [Abstract][Full Text] [Related]
3. Comparing four different approaches for the determination of inter-residue interactions provides insight for the structure prediction of helical membrane proteins.
Gao J; Li Z
Biopolymers; 2009 Jul; 91(7):547-56. PubMed ID: 19241463
[TBL] [Abstract][Full Text] [Related]
4. Structural analysis of residues involving cation-pi interactions in different folding types of membrane proteins.
Gromiha MM; Suwa M
Int J Biol Macromol; 2005 Mar; 35(1-2):55-62. PubMed ID: 15769516
[TBL] [Abstract][Full Text] [Related]
5. Structural comparison and classification of alpha-helical transmembrane domains based on helix interaction patterns.
Fuchs A; Frishman D
Proteins; 2010 Sep; 78(12):2587-99. PubMed ID: 20552684
[TBL] [Abstract][Full Text] [Related]
6. Discrimination of outer membrane proteins using support vector machines.
Park KJ; Gromiha MM; Horton P; Suwa M
Bioinformatics; 2005 Dec; 21(23):4223-9. PubMed ID: 16204348
[TBL] [Abstract][Full Text] [Related]
7. Improving discrimination of outer membrane proteins by fusing different forms of pseudo amino acid composition.
Gao QB; Ye XF; Jin ZC; He J
Anal Biochem; 2010 Mar; 398(1):52-9. PubMed ID: 19874797
[TBL] [Abstract][Full Text] [Related]
8. Amino acid propensities for secondary structures are influenced by the protein structural class.
Costantini S; Colonna G; Facchiano AM
Biochem Biophys Res Commun; 2006 Apr; 342(2):441-51. PubMed ID: 16487481
[TBL] [Abstract][Full Text] [Related]
9. Sequence and structural analysis of cellular retinoic acid-binding proteins reveals a network of conserved hydrophobic interactions.
Gunasekaran K; Hagler AT; Gierasch LM
Proteins; 2004 Feb; 54(2):179-94. PubMed ID: 14696180
[TBL] [Abstract][Full Text] [Related]
10. Sequence and conformational preferences at termini of α-helices in membrane proteins: role of the helix environment.
Shelar A; Bansal M
Proteins; 2014 Dec; 82(12):3420-36. PubMed ID: 25257385
[TBL] [Abstract][Full Text] [Related]
11. Contact pair dynamics during folding of two small proteins: chicken villin head piece and the Alzheimer protein beta-amyloid.
Mukherjee A; Bagchi B
J Chem Phys; 2004 Jan; 120(3):1602-12. PubMed ID: 15268287
[TBL] [Abstract][Full Text] [Related]
12. Improved identification of outer membrane beta barrel proteins using primary sequence, predicted secondary structure, and evolutionary information.
Mizianty MJ; Kurgan L
Proteins; 2011 Jan; 79(1):294-303. PubMed ID: 21064129
[TBL] [Abstract][Full Text] [Related]
13. A structural dissection of amino acid substitutions in helical transmembrane proteins.
Mokrab Y; Stevens TJ; Mizuguchi K
Proteins; 2010 Nov; 78(14):2895-907. PubMed ID: 20715054
[TBL] [Abstract][Full Text] [Related]
14. Helix-helix packing and interfacial pairwise interactions of residues in membrane proteins.
Adamian L; Liang J
J Mol Biol; 2001 Aug; 311(4):891-907. PubMed ID: 11518538
[TBL] [Abstract][Full Text] [Related]
15. Inter-residue interactions in protein folding and stability.
Gromiha MM; Selvaraj S
Prog Biophys Mol Biol; 2004 Oct; 86(2):235-77. PubMed ID: 15288760
[TBL] [Abstract][Full Text] [Related]
16. How strongly do sequence conservation patterns and empirical scales correlate with exposure patterns of transmembrane helices of membrane proteins?
Park Y; Helms V
Biopolymers; 2006 Nov; 83(4):389-99. PubMed ID: 16838301
[TBL] [Abstract][Full Text] [Related]
17. Current status of membrane protein structure classification.
Neumann S; Fuchs A; Mulkidjanian A; Frishman D
Proteins; 2010 May; 78(7):1760-73. PubMed ID: 20186977
[TBL] [Abstract][Full Text] [Related]
18. Amino acid residue doublet propensity in the protein-RNA interface and its application to RNA interface prediction.
Kim OT; Yura K; Go N
Nucleic Acids Res; 2006; 34(22):6450-60. PubMed ID: 17130160
[TBL] [Abstract][Full Text] [Related]
19. TMBETADISC-RBF: Discrimination of beta-barrel membrane proteins using RBF networks and PSSM profiles.
Ou YY; Gromiha MM; Chen SA; Suwa M
Comput Biol Chem; 2008 Jun; 32(3):227-31. PubMed ID: 18434251
[TBL] [Abstract][Full Text] [Related]
20. Distance-dependent classification of amino acids by information theory.
Pape S; Hoffgaard F; Hamacher K
Proteins; 2010 Aug; 78(10):2322-8. PubMed ID: 20544967
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]