These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

231 related articles for article (PubMed ID: 21682142)

  • 1. MAPS: an interactive web server for membrane annotation of transmembrane protein structures.
    Cheema J; Basu G
    Indian J Biochem Biophys; 2011 Apr; 48(2):106-10. PubMed ID: 21682142
    [TBL] [Abstract][Full Text] [Related]  

  • 2. PDB_TM: selection and membrane localization of transmembrane proteins in the protein data bank.
    Tusnády GE; Dosztányi Z; Simon I
    Nucleic Acids Res; 2005 Jan; 33(Database issue):D275-8. PubMed ID: 15608195
    [TBL] [Abstract][Full Text] [Related]  

  • 3. TMDET: web server for detecting transmembrane regions of proteins by using their 3D coordinates.
    Tusnády GE; Dosztányi Z; Simon I
    Bioinformatics; 2005 Apr; 21(7):1276-7. PubMed ID: 15539454
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Analyzing the effects of hydrophobic mismatch on transmembrane α-helices using tryptophan fluorescence spectroscopy.
    Caputo GA
    Methods Mol Biol; 2013; 1063():95-116. PubMed ID: 23975773
    [TBL] [Abstract][Full Text] [Related]  

  • 5. pKNOT: the protein KNOT web server.
    Lai YL; Yen SC; Yu SH; Hwang JK
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W420-4. PubMed ID: 17526524
    [TBL] [Abstract][Full Text] [Related]  

  • 6. THGS: a web-based database of Transmembrane Helices in Genome Sequences.
    Fernando SA; Selvarani P; Das S; Kumar ChK; Mondal S; Ramakumar S; Sekar K
    Nucleic Acids Res; 2004 Jan; 32(Database issue):D125-8. PubMed ID: 14681375
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Transmembrane proteins in the Protein Data Bank: identification and classification.
    Tusnády GE; Dosztányi Z; Simon I
    Bioinformatics; 2004 Nov; 20(17):2964-72. PubMed ID: 15180935
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A fluorescence method to define transmembrane alpha-helices in membrane proteins: studies with bacterial diacylglycerol kinase.
    Jittikoon J; East JM; Lee AG
    Biochemistry; 2007 Sep; 46(38):10950-9. PubMed ID: 17722884
    [TBL] [Abstract][Full Text] [Related]  

  • 9. BSDD: Biomolecules Segment Display Device--a web-based interactive display tool.
    Selvarani P; Shanthi V; Rajesh CK; Saravanan S; Sekar K
    Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W645-8. PubMed ID: 15215468
    [TBL] [Abstract][Full Text] [Related]  

  • 10. ProSAT2--Protein Structure Annotation Server.
    Gabdoulline RR; Ulbrich S; Richter S; Wade RC
    Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W79-83. PubMed ID: 16845114
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Prediction of transmembrane regions of beta-barrel proteins using ANN- and SVM-based methods.
    Natt NK; Kaur H; Raghava GP
    Proteins; 2004 Jul; 56(1):11-8. PubMed ID: 15162482
    [TBL] [Abstract][Full Text] [Related]  

  • 12. TRAMPLE: the transmembrane protein labelling environment.
    Fariselli P; Finelli M; Rossi I; Amico M; Zauli A; Martelli PL; Casadio R
    Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W198-201. PubMed ID: 15980454
    [TBL] [Abstract][Full Text] [Related]  

  • 13. LAMBADA and InflateGRO2: efficient membrane alignment and insertion of membrane proteins for molecular dynamics simulations.
    Schmidt TH; Kandt C
    J Chem Inf Model; 2012 Oct; 52(10):2657-69. PubMed ID: 22989154
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Revisiting hydrophobic mismatch with free energy simulation studies of transmembrane helix tilt and rotation.
    Kim T; Im W
    Biophys J; 2010 Jul; 99(1):175-83. PubMed ID: 20655845
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Molecular dynamics simulations of membrane proteins.
    Biggin PC; Bond PJ
    Methods Mol Biol; 2008; 443():147-60. PubMed ID: 18446286
    [TBL] [Abstract][Full Text] [Related]  

  • 16. ProBLM web server: protein and membrane placement and orientation package.
    Kimmett T; Smith N; Witham S; Petukh M; Sarkar S; Alexov E
    Comput Math Methods Med; 2014; 2014():838259. PubMed ID: 25126110
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Sequence context and modified hydrophobic moment plots help identify 'horizontal' surface helices in transmembrane protein structure prediction.
    Orgel JP
    J Struct Biol; 2004 Oct; 148(1):51-65. PubMed ID: 15363787
    [TBL] [Abstract][Full Text] [Related]  

  • 18. transFold: a web server for predicting the structure and residue contacts of transmembrane beta-barrels.
    Waldispühl J; Berger B; Clote P; Steyaert JM
    Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W189-93. PubMed ID: 16844989
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Families of membranous proteins can be characterized by the amino acid composition of their transmembrane domains.
    Sadka T; Linial M
    Bioinformatics; 2005 Jun; 21 Suppl 1():i378-86. PubMed ID: 15961481
    [TBL] [Abstract][Full Text] [Related]  

  • 20. MemType-2L: a web server for predicting membrane proteins and their types by incorporating evolution information through Pse-PSSM.
    Chou KC; Shen HB
    Biochem Biophys Res Commun; 2007 Aug; 360(2):339-45. PubMed ID: 17586467
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.