265 related articles for article (PubMed ID: 21685054)
21. Selection of human tissue-specific elementary flux modes using gene expression data.
Rezola A; Pey J; de Figueiredo LF; Podhorski A; Schuster S; Rubio A; Planes FJ
Bioinformatics; 2013 Aug; 29(16):2009-16. PubMed ID: 23742984
[TBL] [Abstract][Full Text] [Related]
22. Complete enumeration of elementary flux modes through scalable demand-based subnetwork definition.
Hunt KA; Folsom JP; Taffs RL; Carlson RP
Bioinformatics; 2014 Jun; 30(11):1569-78. PubMed ID: 24497502
[TBL] [Abstract][Full Text] [Related]
23. Improving the EFMs quality by augmenting their representativeness in LP methods.
Hidalgo JF; Egea JA; Guil F; García JM
BMC Syst Biol; 2018 Nov; 12(Suppl 5):101. PubMed ID: 30458791
[TBL] [Abstract][Full Text] [Related]
24. tEFMA: computing thermodynamically feasible elementary flux modes in metabolic networks.
Gerstl MP; Jungreuthmayer C; Zanghellini J
Bioinformatics; 2015 Jul; 31(13):2232-4. PubMed ID: 25701571
[TBL] [Abstract][Full Text] [Related]
25. From elementary flux modes to elementary flux vectors: Metabolic pathway analysis with arbitrary linear flux constraints.
Klamt S; Regensburger G; Gerstl MP; Jungreuthmayer C; Schuster S; Mahadevan R; Zanghellini J; Müller S
PLoS Comput Biol; 2017 Apr; 13(4):e1005409. PubMed ID: 28406903
[TBL] [Abstract][Full Text] [Related]
26. SSDesign: Computational metabolic pathway design based on flux variability using elementary flux modes.
Toya Y; Shiraki T; Shimizu H
Biotechnol Bioeng; 2015 Apr; 112(4):759-68. PubMed ID: 25408191
[TBL] [Abstract][Full Text] [Related]
27. gEFM: An Algorithm for Computing Elementary Flux Modes Using Graph Traversal.
Ullah E; Aeron S; Hassoun S
IEEE/ACM Trans Comput Biol Bioinform; 2016; 13(1):122-34. PubMed ID: 26886737
[TBL] [Abstract][Full Text] [Related]
28. FluxModeCalculator: an efficient tool for large-scale flux mode computation.
van Klinken JB; Willems van Dijk K
Bioinformatics; 2016 Apr; 32(8):1265-6. PubMed ID: 26685305
[TBL] [Abstract][Full Text] [Related]
29. Sequential computation of elementary modes and minimal cut sets in genome-scale metabolic networks using alternate integer linear programming.
Song HS; Goldberg N; Mahajan A; Ramkrishna D
Bioinformatics; 2017 Aug; 33(15):2345-2353. PubMed ID: 28369193
[TBL] [Abstract][Full Text] [Related]
30. Modeling the metabolic dynamics at the genome-scale by optimized yield analysis.
Luo H; Li P; Ji B; Nielsen J
Metab Eng; 2023 Jan; 75():119-130. PubMed ID: 36503050
[TBL] [Abstract][Full Text] [Related]
31. Thermodynamic constraints for identifying elementary flux modes.
Peres S; Schuster S; Dague P
Biochem Soc Trans; 2018 Jun; 46(3):641-647. PubMed ID: 29743275
[TBL] [Abstract][Full Text] [Related]
32. TRFBA: an algorithm to integrate genome-scale metabolic and transcriptional regulatory networks with incorporation of expression data.
Motamedian E; Mohammadi M; Shojaosadati SA; Heydari M
Bioinformatics; 2017 Apr; 33(7):1057-1063. PubMed ID: 28065897
[TBL] [Abstract][Full Text] [Related]
33. Do elementary flux modes combine linearly at the "atomic" level?: integrating tracer-based metabolomics data and elementary flux modes.
Pey J; Theodoropoulos C; Rezola A; Rubio A; Cascante M; Planes FJ
Biosystems; 2011 Aug; 105(2):140-6. PubMed ID: 21536097
[TBL] [Abstract][Full Text] [Related]
34. Robustness analysis of elementary flux modes generated by column generation.
Oddsdóttir HÆ; Hagrot E; Chotteau V; Forsgren A
Math Biosci; 2016 Mar; 273():45-56. PubMed ID: 26748294
[TBL] [Abstract][Full Text] [Related]
35. On the geometry of elementary flux modes.
Wieder F; Henk M; Bockmayr A
J Math Biol; 2023 Aug; 87(3):50. PubMed ID: 37646830
[TBL] [Abstract][Full Text] [Related]
36. Fast flux module detection using matroid theory.
Reimers AC; Bruggeman FJ; Olivier BG; Stougie L
J Comput Biol; 2015 May; 22(5):414-24. PubMed ID: 25565150
[TBL] [Abstract][Full Text] [Related]
37. Hands-on metabolism analysis of complex biochemical networks using elementary flux modes.
Schäuble S; Schuster S; Kaleta C
Methods Enzymol; 2011; 500():437-56. PubMed ID: 21943910
[TBL] [Abstract][Full Text] [Related]
38. Towards scaling elementary flux mode computation.
Ullah E; Yosafshahi M; Hassoun S
Brief Bioinform; 2020 Dec; 21(6):1875-1885. PubMed ID: 31745550
[TBL] [Abstract][Full Text] [Related]
39. Pathway knockout and redundancy in metabolic networks.
Min Y; Jin X; Chen M; Pan Z; Ge Y; Chang J
J Theor Biol; 2011 Feb; 270(1):63-9. PubMed ID: 21075121
[TBL] [Abstract][Full Text] [Related]
40. Can the whole be less than the sum of its parts? Pathway analysis in genome-scale metabolic networks using elementary flux patterns.
Kaleta C; de Figueiredo LF; Schuster S
Genome Res; 2009 Oct; 19(10):1872-83. PubMed ID: 19541909
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]