These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

158 related articles for article (PubMed ID: 21697132)

  • 1. SEAL: a distributed short read mapping and duplicate removal tool.
    Pireddu L; Leo S; Zanetti G
    Bioinformatics; 2011 Aug; 27(15):2159-60. PubMed ID: 21697132
    [TBL] [Abstract][Full Text] [Related]  

  • 2. The Sequence Alignment/Map format and SAMtools.
    Li H; Handsaker B; Wysoker A; Fennell T; Ruan J; Homer N; Marth G; Abecasis G; Durbin R;
    Bioinformatics; 2009 Aug; 25(16):2078-9. PubMed ID: 19505943
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Multi-threading the generation of Burrows-Wheeler Alignment.
    Jo H
    Genet Mol Res; 2016 May; 15(2):. PubMed ID: 27323088
    [TBL] [Abstract][Full Text] [Related]  

  • 4. MICA: A fast short-read aligner that takes full advantage of Many Integrated Core Architecture (MIC).
    Luo R; Cheung J; Wu E; Wang H; Chan SH; Law WC; He G; Yu C; Liu CM; Zhou D; Li Y; Li R; Wang J; Zhu X; Peng S; Lam TW
    BMC Bioinformatics; 2015; 16 Suppl 7(Suppl 7):S10. PubMed ID: 25952019
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Updates to the RMAP short-read mapping software.
    Smith AD; Chung WY; Hodges E; Kendall J; Hannon G; Hicks J; Xuan Z; Zhang MQ
    Bioinformatics; 2009 Nov; 25(21):2841-2. PubMed ID: 19736251
    [TBL] [Abstract][Full Text] [Related]  

  • 6. CUSHAW: a CUDA compatible short read aligner to large genomes based on the Burrows-Wheeler transform.
    Liu Y; Schmidt B; Maskell DL
    Bioinformatics; 2012 Jul; 28(14):1830-7. PubMed ID: 22576173
    [TBL] [Abstract][Full Text] [Related]  

  • 7. SOAP2: an improved ultrafast tool for short read alignment.
    Li R; Yu C; Li Y; Lam TW; Yiu SM; Kristiansen K; Wang J
    Bioinformatics; 2009 Aug; 25(15):1966-7. PubMed ID: 19497933
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Parallel and Scalable Short-Read Alignment on Multi-Core Clusters Using UPC+.
    González-Domínguez J; Liu Y; Schmidt B
    PLoS One; 2016; 11(1):e0145490. PubMed ID: 26731399
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Comparative analysis of algorithms for next-generation sequencing read alignment.
    Ruffalo M; LaFramboise T; Koyutürk M
    Bioinformatics; 2011 Oct; 27(20):2790-6. PubMed ID: 21856737
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A hybrid short read mapping accelerator.
    Chen Y; Schmidt B; Maskell DL
    BMC Bioinformatics; 2013 Feb; 14():67. PubMed ID: 23441908
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Fast and accurate short read alignment with Burrows-Wheeler transform.
    Li H; Durbin R
    Bioinformatics; 2009 Jul; 25(14):1754-60. PubMed ID: 19451168
    [TBL] [Abstract][Full Text] [Related]  

  • 12. CloudBurst: highly sensitive read mapping with MapReduce.
    Schatz MC
    Bioinformatics; 2009 Jun; 25(11):1363-9. PubMed ID: 19357099
    [TBL] [Abstract][Full Text] [Related]  

  • 13. DistMap: a toolkit for distributed short read mapping on a Hadoop cluster.
    Pandey RV; Schlötterer C
    PLoS One; 2013; 8(8):e72614. PubMed ID: 24009693
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Evaluating the necessity of PCR duplicate removal from next-generation sequencing data and a comparison of approaches.
    Ebbert MT; Wadsworth ME; Staley LA; Hoyt KL; Pickett B; Miller J; Duce J; ; Kauwe JS; Ridge PG
    BMC Bioinformatics; 2016 Jul; 17 Suppl 7(Suppl 7):239. PubMed ID: 27454357
    [TBL] [Abstract][Full Text] [Related]  

  • 15. YAHA: fast and flexible long-read alignment with optimal breakpoint detection.
    Faust GG; Hall IM
    Bioinformatics; 2012 Oct; 28(19):2417-24. PubMed ID: 22829624
    [TBL] [Abstract][Full Text] [Related]  

  • 16. BatMis: a fast algorithm for k-mismatch mapping.
    Tennakoon C; Purbojati RW; Sung WK
    Bioinformatics; 2012 Aug; 28(16):2122-8. PubMed ID: 22689389
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Faster single-end alignment generation utilizing multi-thread for BWA.
    Jo H; Koh G
    Biomed Mater Eng; 2015; 26 Suppl 1():S1791-6. PubMed ID: 26405948
    [TBL] [Abstract][Full Text] [Related]  

  • 18. MarDRe: efficient MapReduce-based removal of duplicate DNA reads in the cloud.
    Expósito RR; Veiga J; González-Domínguez J; Touriño J
    Bioinformatics; 2017 Sep; 33(17):2762-2764. PubMed ID: 28475668
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A hybrid and scalable error correction algorithm for indel and substitution errors of long reads.
    Das AK; Goswami S; Lee K; Park SJ
    BMC Genomics; 2019 Dec; 20(Suppl 11):948. PubMed ID: 31856721
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Long read alignment based on maximal exact match seeds.
    Liu Y; Schmidt B
    Bioinformatics; 2012 Sep; 28(18):i318-i324. PubMed ID: 22962447
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.