These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

92 related articles for article (PubMed ID: 21707396)

  • 21. Pfarao: a web application for protein family analysis customized for cytoskeletal and motor proteins (CyMoBase).
    Odronitz F; Kollmar M
    BMC Genomics; 2006 Nov; 7():300. PubMed ID: 17134497
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Atomic-level characterization of the structural dynamics of proteins.
    Shaw DE; Maragakis P; Lindorff-Larsen K; Piana S; Dror RO; Eastwood MP; Bank JA; Jumper JM; Salmon JK; Shan Y; Wriggers W
    Science; 2010 Oct; 330(6002):341-6. PubMed ID: 20947758
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Optimizing the use of open-source software applications in drug discovery.
    Geldenhuys WJ; Gaasch KE; Watson M; Allen DD; Van der Schyf CJ
    Drug Discov Today; 2006 Feb; 11(3-4):127-32. PubMed ID: 16533710
    [TBL] [Abstract][Full Text] [Related]  

  • 24. MDTraj: A Modern Open Library for the Analysis of Molecular Dynamics Trajectories.
    McGibbon RT; Beauchamp KA; Harrigan MP; Klein C; Swails JM; Hernández CX; Schwantes CR; Wang LP; Lane TJ; Pande VS
    Biophys J; 2015 Oct; 109(8):1528-32. PubMed ID: 26488642
    [TBL] [Abstract][Full Text] [Related]  

  • 25. An integrated web interface for large-scale characterization of sequence data.
    Cheung KH; Kumar A; Snyder M; Miller P
    Funct Integr Genomics; 2000 May; 1(1):70-5. PubMed ID: 11793223
    [TBL] [Abstract][Full Text] [Related]  

  • 26. CHAPERON
    Yekeen AA; Durojaye OA; Idris MO; Muritala HF; Arise RO
    Comput Struct Biotechnol J; 2023; 21():4849-4858. PubMed ID: 37854635
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Biowep: a workflow enactment portal for bioinformatics applications.
    Romano P; Bartocci E; Bertolini G; De Paoli F; Marra D; Mauri G; Merelli E; Milanesi L
    BMC Bioinformatics; 2007 Mar; 8 Suppl 1(Suppl 1):S19. PubMed ID: 17430563
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Use of web services for computerized medical decision support, including infection control and antibiotic management, in the intensive care unit.
    Steurbaut K; Van Hoecke S; Colpaert K; Lamont K; Taveirne K; Depuydt P; Benoit D; Decruyenaere J; De Turck F
    J Telemed Telecare; 2010; 16(1):25-9. PubMed ID: 20086264
    [TBL] [Abstract][Full Text] [Related]  

  • 29. GRISSOM platform: enabling distributed processing and management of biological data through fusion of grid and web technologies.
    Chatziioannou AA; Kanaris I; Doukas C; Moulos P; Kolisis FN; Maglogiannis I
    IEEE Trans Inf Technol Biomed; 2011 Jan; 15(1):83-92. PubMed ID: 21078581
    [TBL] [Abstract][Full Text] [Related]  

  • 30. MDANSE: An Interactive Analysis Environment for Molecular Dynamics Simulations.
    Goret G; Aoun B; Pellegrini E
    J Chem Inf Model; 2017 Jan; 57(1):1-5. PubMed ID: 28026944
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Long-timescale molecular dynamics simulations of protein structure and function.
    Klepeis JL; Lindorff-Larsen K; Dror RO; Shaw DE
    Curr Opin Struct Biol; 2009 Apr; 19(2):120-7. PubMed ID: 19361980
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Molecular dynamics simulations of peptides and proteins with a continuum electrostatic model based on screened Coulomb potentials.
    Hassan SA; Mehler EL; Zhang D; Weinstein H
    Proteins; 2003 Apr; 51(1):109-25. PubMed ID: 12596268
    [TBL] [Abstract][Full Text] [Related]  

  • 33. IVE (Image Visualization Environment): a software platform for all three-dimensional microscopy applications.
    Chen H; Hughes DD; Chan TA; Sedat JW; Agard DA
    J Struct Biol; 1996; 116(1):56-60. PubMed ID: 8742723
    [TBL] [Abstract][Full Text] [Related]  

  • 34. FATSLiM: a fast and robust software to analyze MD simulations of membranes.
    Buchoux S
    Bioinformatics; 2017 Jan; 33(1):133-134. PubMed ID: 27578804
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Grcarma: A fully automated task-oriented interface for the analysis of molecular dynamics trajectories.
    Koukos PI; Glykos NM
    J Comput Chem; 2013 Oct; 34(26):2310-2. PubMed ID: 24159629
    [TBL] [Abstract][Full Text] [Related]  

  • 36. MD-TASK: a software suite for analyzing molecular dynamics trajectories.
    Brown DK; Penkler DL; Sheik Amamuddy O; Ross C; Atilgan AR; Atilgan C; Tastan Bishop Ö
    Bioinformatics; 2017 Sep; 33(17):2768-2771. PubMed ID: 28575169
    [TBL] [Abstract][Full Text] [Related]  

  • 37. A Flexible, Grid-Enabled Web Portal for GROMACS Molecular Dynamics Simulations.
    van Dijk M; Wassenaar TA; Bonvin AM
    J Chem Theory Comput; 2012 Oct; 8(10):3463-72. PubMed ID: 26592996
    [TBL] [Abstract][Full Text] [Related]  

  • 38. MDContactCom: a tool to identify differences of protein molecular dynamics from two MD simulation trajectories in terms of interresidue contacts.
    Motono C; Yanagida S; Sato M; Hirokawa T
    Bioinformatics; 2021 Dec; 38(1):273-274. PubMed ID: 34289011
    [TBL] [Abstract][Full Text] [Related]  

  • 39. An online approach for mining collective behaviors from molecular dynamics simulations.
    Ramanathan A; Agarwal PK; Kurnikova M; Langmead CJ
    J Comput Biol; 2010 Mar; 17(3):309-24. PubMed ID: 20377447
    [TBL] [Abstract][Full Text] [Related]  

  • 40. MDsrv: visual sharing and analysis of molecular dynamics simulations.
    Kampfrath M; Staritzbichler R; Hernández GP; Rose AS; Tiemann JKS; Scheuermann G; Wiegreffe D; Hildebrand PW
    Nucleic Acids Res; 2022 Jul; 50(W1):W483-W489. PubMed ID: 35639717
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 5.