221 related articles for article (PubMed ID: 21712343)
1. Ortholog identification in the presence of domain architecture rearrangement.
Sjölander K; Datta RS; Shen Y; Shoffner GM
Brief Bioinform; 2011 Sep; 12(5):413-22. PubMed ID: 21712343
[TBL] [Abstract][Full Text] [Related]
2. MultiMSOAR 2.0: an accurate tool to identify ortholog groups among multiple genomes.
Shi G; Peng MC; Jiang T
PLoS One; 2011; 6(6):e20892. PubMed ID: 21712981
[TBL] [Abstract][Full Text] [Related]
3. Automatic clustering of orthologs and in-paralogs from pairwise species comparisons.
Remm M; Storm CE; Sonnhammer EL
J Mol Biol; 2001 Dec; 314(5):1041-52. PubMed ID: 11743721
[TBL] [Abstract][Full Text] [Related]
4. Orthology Prediction and Phylogenetic Analysis Methods in Plants.
Sharaf A; Elateek S
Methods Mol Biol; 2022; 2512():3-22. PubMed ID: 35817996
[TBL] [Abstract][Full Text] [Related]
5. Automated ortholog inference from phylogenetic trees and calculation of orthology reliability.
Storm CE; Sonnhammer EL
Bioinformatics; 2002 Jan; 18(1):92-9. PubMed ID: 11836216
[TBL] [Abstract][Full Text] [Related]
6. DODO: an efficient orthologous genes assignment tool based on domain architectures. Domain based ortholog detection.
Chen TW; Wu TH; Ng WV; Lin WC
BMC Bioinformatics; 2010 Oct; 11 Suppl 7(Suppl 7):S6. PubMed ID: 21106128
[TBL] [Abstract][Full Text] [Related]
7. Comparative assessment of performance and genome dependence among phylogenetic profiling methods.
Snitkin ES; Gustafson AM; Mellor J; Wu J; DeLisi C
BMC Bioinformatics; 2006 Sep; 7():420. PubMed ID: 17005048
[TBL] [Abstract][Full Text] [Related]
8. Bioinformatics methods for the comparative analysis of metazoan mitochondrial genome sequences.
Bernt M; Braband A; Middendorf M; Misof B; Rota-Stabelli O; Stadler PF
Mol Phylogenet Evol; 2013 Nov; 69(2):320-7. PubMed ID: 23023207
[TBL] [Abstract][Full Text] [Related]
9. Computational methods for Gene Orthology inference.
Kristensen DM; Wolf YI; Mushegian AR; Koonin EV
Brief Bioinform; 2011 Sep; 12(5):379-91. PubMed ID: 21690100
[TBL] [Abstract][Full Text] [Related]
10. Inferring Orthology and Paralogy.
Altenhoff AM; Glover NM; Dessimoz C
Methods Mol Biol; 2019; 1910():149-175. PubMed ID: 31278664
[TBL] [Abstract][Full Text] [Related]
11. Hieranoid: hierarchical orthology inference.
Schreiber F; Sonnhammer ELL
J Mol Biol; 2013 Jun; 425(11):2072-2081. PubMed ID: 23485417
[TBL] [Abstract][Full Text] [Related]
12. Comparison of eukaryotic phylogenetic profiling approaches using species tree aware methods.
Ruano-Rubio V; Poch O; Thompson JD
BMC Bioinformatics; 2009 Nov; 10():383. PubMed ID: 19930674
[TBL] [Abstract][Full Text] [Related]
13. Clusters of orthologous genes for 41 archaeal genomes and implications for evolutionary genomics of archaea.
Makarova KS; Sorokin AV; Novichkov PS; Wolf YI; Koonin EV
Biol Direct; 2007 Nov; 2():33. PubMed ID: 18042280
[TBL] [Abstract][Full Text] [Related]
14. Family classification without domain chaining.
Joseph JM; Durand D
Bioinformatics; 2009 Jun; 25(12):i45-53. PubMed ID: 19478015
[TBL] [Abstract][Full Text] [Related]
15. Protein comparison at the domain architecture level.
Lee B; Lee D
BMC Bioinformatics; 2009 Dec; 10 Suppl 15(Suppl 15):S5. PubMed ID: 19958515
[TBL] [Abstract][Full Text] [Related]
16. A De-Novo Genome Analysis Pipeline (DeNoGAP) for large-scale comparative prokaryotic genomics studies.
Thakur S; Guttman DS
BMC Bioinformatics; 2016 Jun; 17(1):260. PubMed ID: 27363390
[TBL] [Abstract][Full Text] [Related]
17. Annotation transfer for genomics: measuring functional divergence in multi-domain proteins.
Hegyi H; Gerstein M
Genome Res; 2001 Oct; 11(10):1632-40. PubMed ID: 11591640
[TBL] [Abstract][Full Text] [Related]
18. Implementation of homology based and non-homology based computational methods for the identification and annotation of orphan enzymes: using Mycobacterium tuberculosis H37Rv as a case study.
Sinha S; Lynn AM; Desai DK
BMC Bioinformatics; 2020 Oct; 21(1):466. PubMed ID: 33076816
[TBL] [Abstract][Full Text] [Related]
19. Reconstruction of ancestral gene orders using intermediate genomes.
Feijão P
BMC Bioinformatics; 2015; 16 Suppl 14(Suppl 14):S3. PubMed ID: 26451811
[TBL] [Abstract][Full Text] [Related]
20. Classification and Lineage Tracing of SH2 Domains Throughout Eukaryotes.
Liu BA
Methods Mol Biol; 2017; 1555():59-75. PubMed ID: 28092027
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]