BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

117 related articles for article (PubMed ID: 21714133)

  • 1. Ranking valid topologies of the secondary structure elements using a constraint graph.
    Al Nasr K; Ranjan D; Zubair M; He J
    J Bioinform Comput Biol; 2011 Jun; 9(3):415-30. PubMed ID: 21714133
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Solving the Secondary Structure Matching Problem in Cryo-EM De Novo Modeling Using a Constrained K-Shortest Path Graph Algorithm.
    Al Nasr K; Ranjan D; Zubair M; Chen L; He J
    IEEE/ACM Trans Comput Biol Bioinform; 2014; 11(2):419-30. PubMed ID: 26355788
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A Dynamic Programming Algorithm for Finding the Optimal Placement of a Secondary Structure Topology in Cryo-EM Data.
    Biswas A; Ranjan D; Zubair M; He J
    J Comput Biol; 2015 Sep; 22(9):837-43. PubMed ID: 26244416
    [TBL] [Abstract][Full Text] [Related]  

  • 4. LPTD: a novel linear programming-based topology determination method for cryo-EM maps.
    Behkamal B; Naghibzadeh M; Pagnani A; Saberi MR; Al Nasr K
    Bioinformatics; 2022 May; 38(10):2734-2741. PubMed ID: 35561171
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Structure prediction for the helical skeletons detected from the low resolution protein density map.
    Al Nasr K; Sun W; He J
    BMC Bioinformatics; 2010 Jan; 11 Suppl 1(Suppl 1):S44. PubMed ID: 20122218
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Three-Dimensional Graph Matching to Identify Secondary Structure Correspondence of Medium-Resolution Cryo-EM Density Maps.
    Behkamal B; Naghibzadeh M; Saberi MR; Tehranizadeh ZA; Pagnani A; Al Nasr K
    Biomolecules; 2021 Nov; 11(12):. PubMed ID: 34944417
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Solving the α-helix correspondence problem at medium-resolution Cryo-EM maps through modeling and 3D matching.
    Behkamal B; Naghibzadeh M; Pagnani A; Saberi MR; Al Nasr K
    J Mol Graph Model; 2021 Mar; 103():107815. PubMed ID: 33338845
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Identification of secondary structure elements in intermediate-resolution density maps.
    Baker ML; Ju T; Chiu W
    Structure; 2007 Jan; 15(1):7-19. PubMed ID: 17223528
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Reduction of the secondary structure topological space through direct estimation of the contact energy formed by the secondary structures.
    Sun W; He J
    BMC Bioinformatics; 2009 Jan; 10 Suppl 1(Suppl 1):S40. PubMed ID: 19208142
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Identification of alpha-helices from low resolution protein density maps.
    Dal Palù A; He J; Pontelli E; Lu Y
    Comput Syst Bioinformatics Conf; 2006; ():89-98. PubMed ID: 17369628
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Deriving topology and sequence alignment for the helix skeleton in low-resolution protein density maps.
    Lu Y; He J; Strauss CE
    J Bioinform Comput Biol; 2008 Feb; 6(1):183-201. PubMed ID: 18324752
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Combining Cryo-EM Density Map and Residue Contact for Protein Secondary Structure Topologies.
    Alshammari M; He J
    Molecules; 2021 Nov; 26(22):. PubMed ID: 34834140
    [TBL] [Abstract][Full Text] [Related]  

  • 13. CHALLENGES IN MATCHING SECONDARY STRUCTURES IN CRYO-EM: AN EXPLORATION.
    Haslam D; Zubair M; Ranjan D; Biswas A; He J
    Proceedings (IEEE Int Conf Bioinformatics Biomed); 2016 Dec; 2016():1714-1719. PubMed ID: 29770261
    [TBL] [Abstract][Full Text] [Related]  

  • 14. An Effective Computational Method Incorporating Multiple Secondary Structure Predictions in Topology Determination for Cryo-EM Images.
    Biswas A; Ranjan D; Zubair M; Zeil S; Nasr KA; He J
    IEEE/ACM Trans Comput Biol Bioinform; 2017; 14(3):578-586. PubMed ID: 27008671
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Tracing beta strands using StrandTwister from cryo-EM density maps at medium resolutions.
    Si D; He J
    Structure; 2014 Nov; 22(11):1665-76. PubMed ID: 25308866
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Native secondary structure topology has near minimum contact energy among all possible geometrically constrained topologies.
    Sun W; He J
    Proteins; 2009 Oct; 77(1):159-73. PubMed ID: 19415754
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A machine learning approach for the identification of protein secondary structure elements from electron cryo-microscopy density maps.
    Si D; Ji S; Nasr KA; He J
    Biopolymers; 2012 Sep; 97(9):698-708. PubMed ID: 22696406
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Multiple subunit fitting into a low-resolution density map of a macromolecular complex using a gaussian mixture model.
    Kawabata T
    Biophys J; 2008 Nov; 95(10):4643-58. PubMed ID: 18708469
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Cryo-EM map interpretation and protein model-building using iterative map segmentation.
    Terwilliger TC; Adams PD; Afonine PV; Sobolev OV
    Protein Sci; 2020 Jan; 29(1):87-99. PubMed ID: 31599033
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Edged watershed segmentation: a semi-interactive algorithm for segmentation of low-resolution maps from electron cryomicroscopy.
    Baker LA; Rubinstein JL
    J Struct Biol; 2011 Oct; 176(1):127-32. PubMed ID: 21763426
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.