BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

88 related articles for article (PubMed ID: 21742634)

  • 1. PREDA: an R-package to identify regional variations in genomic data.
    Ferrari F; Solari A; Battaglia C; Bicciato S
    Bioinformatics; 2011 Sep; 27(17):2446-7. PubMed ID: 21742634
    [TBL] [Abstract][Full Text] [Related]  

  • 2. DNAshapeR: an R/Bioconductor package for DNA shape prediction and feature encoding.
    Chiu TP; Comoglio F; Zhou T; Yang L; Paro R; Rohs R
    Bioinformatics; 2016 Apr; 32(8):1211-3. PubMed ID: 26668005
    [TBL] [Abstract][Full Text] [Related]  

  • 3. HilbertCurve: an R/Bioconductor package for high-resolution visualization of genomic data.
    Gu Z; Eils R; Schlesner M
    Bioinformatics; 2016 Aug; 32(15):2372-4. PubMed ID: 27153599
    [TBL] [Abstract][Full Text] [Related]  

  • 4. karyoploteR: an R/Bioconductor package to plot customizable genomes displaying arbitrary data.
    Gel B; Serra E
    Bioinformatics; 2017 Oct; 33(19):3088-3090. PubMed ID: 28575171
    [TBL] [Abstract][Full Text] [Related]  

  • 5. IWTomics: testing high-resolution sequence-based 'Omics' data at multiple locations and scales.
    Cremona MA; Pini A; Cumbo F; Makova KD; Chiaromonte F; Vantini S
    Bioinformatics; 2018 Jul; 34(13):2289-2291. PubMed ID: 29474526
    [TBL] [Abstract][Full Text] [Related]  

  • 6. regioneR: an R/Bioconductor package for the association analysis of genomic regions based on permutation tests.
    Gel B; Díez-Villanueva A; Serra E; Buschbeck M; Peinado MA; Malinverni R
    Bioinformatics; 2016 Jan; 32(2):289-91. PubMed ID: 26424858
    [TBL] [Abstract][Full Text] [Related]  

  • 7. R453Plus1Toolbox: an R/Bioconductor package for analyzing Roche 454 Sequencing data.
    Klein HU; Bartenhagen C; Kohlmann A; Grossmann V; Ruckert C; Haferlach T; Dugas M
    Bioinformatics; 2011 Apr; 27(8):1162-3. PubMed ID: 21349869
    [TBL] [Abstract][Full Text] [Related]  

  • 8. synbreed: a framework for the analysis of genomic prediction data using R.
    Wimmer V; Albrecht T; Auinger HJ; Schön CC
    Bioinformatics; 2012 Aug; 28(15):2086-7. PubMed ID: 22689388
    [TBL] [Abstract][Full Text] [Related]  

  • 9. chromPlot: visualization of genomic data in chromosomal context.
    Oróstica KY; Verdugo RA
    Bioinformatics; 2016 Aug; 32(15):2366-8. PubMed ID: 27153580
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Complex heatmaps reveal patterns and correlations in multidimensional genomic data.
    Gu Z; Eils R; Schlesner M
    Bioinformatics; 2016 Sep; 32(18):2847-9. PubMed ID: 27207943
    [TBL] [Abstract][Full Text] [Related]  

  • 11. RSVSim: an R/Bioconductor package for the simulation of structural variations.
    Bartenhagen C; Dugas M
    Bioinformatics; 2013 Jul; 29(13):1679-81. PubMed ID: 23620362
    [TBL] [Abstract][Full Text] [Related]  

  • 12. mRMRe: an R package for parallelized mRMR ensemble feature selection.
    De Jay N; Papillon-Cavanagh S; Olsen C; El-Hachem N; Bontempi G; Haibe-Kains B
    Bioinformatics; 2013 Sep; 29(18):2365-8. PubMed ID: 23825369
    [TBL] [Abstract][Full Text] [Related]  

  • 13. GenomicScores: seamless access to genomewide position-specific scores from R and Bioconductor.
    Puigdevall P; Castelo R
    Bioinformatics; 2018 Sep; 34(18):3208-3210. PubMed ID: 29718111
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Novel features and enhancements in BioBin, a tool for the biologically inspired binning and association analysis of rare variants.
    Basile AO; Byrska-Bishop M; Wallace J; Frase AT; Ritchie MD
    Bioinformatics; 2018 Feb; 34(3):527-529. PubMed ID: 28968757
    [TBL] [Abstract][Full Text] [Related]  

  • 15. GUIDEseq: a bioconductor package to analyze GUIDE-Seq datasets for CRISPR-Cas nucleases.
    Zhu LJ; Lawrence M; Gupta A; Pagès H; Kucukural A; Garber M; Wolfe SA
    BMC Genomics; 2017 May; 18(1):379. PubMed ID: 28506212
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Genetic association testing using the GENESIS R/Bioconductor package.
    Gogarten SM; Sofer T; Chen H; Yu C; Brody JA; Thornton TA; Rice KM; Conomos MP
    Bioinformatics; 2019 Dec; 35(24):5346-5348. PubMed ID: 31329242
    [TBL] [Abstract][Full Text] [Related]  

  • 17. gtrellis: an R/Bioconductor package for making genome-level Trellis graphics.
    Gu Z; Eils R; Schlesner M
    BMC Bioinformatics; 2016 Apr; 17():169. PubMed ID: 27089965
    [TBL] [Abstract][Full Text] [Related]  

  • 18. WoPPER: Web server for Position Related data analysis of gene Expression in Prokaryotes.
    Puccio S; Grillo G; Licciulli F; Severgnini M; Liuni S; Bicciato S; De Bellis G; Ferrari F; Peano C
    Nucleic Acids Res; 2017 Jul; 45(W1):W109-W115. PubMed ID: 28460063
    [TBL] [Abstract][Full Text] [Related]  

  • 19. ExperimentSubset: an R package to manage subsets of Bioconductor Experiment objects.
    Sarfraz I; Asif M; Campbell JD
    Bioinformatics; 2021 Sep; 37(18):3058-3060. PubMed ID: 33715007
    [TBL] [Abstract][Full Text] [Related]  

  • 20. GGRaSP: a R-package for selecting representative genomes using Gaussian mixture models.
    Clarke TH; Brinkac LM; Sutton G; Fouts DE
    Bioinformatics; 2018 Sep; 34(17):3032-3034. PubMed ID: 29668840
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 5.