209 related articles for article (PubMed ID: 21768345)
21. A decoy set for the thermostable subdomain from chicken villin headpiece, comparison of different free energy estimators.
Fogolari F; Tosatto SC; Colombo G
BMC Bioinformatics; 2005 Dec; 6():301. PubMed ID: 16354298
[TBL] [Abstract][Full Text] [Related]
22. The early stage of folding of villin headpiece subdomain observed in a 200-nanosecond fully solvated molecular dynamics simulation.
Duan Y; Wang L; Kollman PA
Proc Natl Acad Sci U S A; 1998 Aug; 95(17):9897-902. PubMed ID: 9707572
[TBL] [Abstract][Full Text] [Related]
23. High-resolution x-ray crystal structures of the villin headpiece subdomain, an ultrafast folding protein.
Chiu TK; Kubelka J; Herbst-Irmer R; Eaton WA; Hofrichter J; Davies DR
Proc Natl Acad Sci U S A; 2005 May; 102(21):7517-22. PubMed ID: 15894611
[TBL] [Abstract][Full Text] [Related]
24. How robust are protein folding simulations with respect to force field parameterization?
Piana S; Lindorff-Larsen K; Shaw DE
Biophys J; 2011 May; 100(9):L47-9. PubMed ID: 21539772
[TBL] [Abstract][Full Text] [Related]
25. Two-stage folding of HP-35 from ab initio simulations.
Lei H; Duan Y
J Mol Biol; 2007 Jun; 370(1):196-206. PubMed ID: 17512537
[TBL] [Abstract][Full Text] [Related]
26. Folding free-energy landscape of villin headpiece subdomain from molecular dynamics simulations.
Lei H; Wu C; Liu H; Duan Y
Proc Natl Acad Sci U S A; 2007 Mar; 104(12):4925-30. PubMed ID: 17360390
[TBL] [Abstract][Full Text] [Related]
27. Experimental tests of villin subdomain folding simulations.
Kubelka J; Eaton WA; Hofrichter J
J Mol Biol; 2003 Jun; 329(4):625-30. PubMed ID: 12787664
[TBL] [Abstract][Full Text] [Related]
28. High-resolution crystal structures of villin headpiece and mutants with reduced F-actin binding activity.
Meng J; Vardar D; Wang Y; Guo HC; Head JF; McKnight CJ
Biochemistry; 2005 Sep; 44(36):11963-73. PubMed ID: 16142894
[TBL] [Abstract][Full Text] [Related]
29. Low folding cooperativity of HP35 revealed by single-molecule force spectroscopy and molecular dynamics simulation.
Lv C; Tan C; Qin M; Zou D; Cao Y; Wang W
Biophys J; 2012 Apr; 102(8):1944-51. PubMed ID: 22768951
[TBL] [Abstract][Full Text] [Related]
30. Probing the folding transition state structure of the villin headpiece subdomain via side chain and backbone mutagenesis.
Bunagan MR; Gao J; Kelly JW; Gai F
J Am Chem Soc; 2009 Jun; 131(21):7470-6. PubMed ID: 19425552
[TBL] [Abstract][Full Text] [Related]
31. Pathways to a protein folding intermediate observed in a 1-microsecond simulation in aqueous solution.
Duan Y; Kollman PA
Science; 1998 Oct; 282(5389):740-4. PubMed ID: 9784131
[TBL] [Abstract][Full Text] [Related]
32. Reconciling the solution and X-ray structures of the villin headpiece helical subdomain: molecular dynamics simulations and double mutant cycles reveal a stabilizing cation-pi interaction.
Wickstrom L; Bi Y; Hornak V; Raleigh DP; Simmerling C
Biochemistry; 2007 Mar; 46(12):3624-34. PubMed ID: 17338549
[TBL] [Abstract][Full Text] [Related]
33. A compact native 24-residue supersecondary structure derived from the villin headpiece subdomain.
Hocking HG; Häse F; Madl T; Zacharias M; Rief M; Žoldák G
Biophys J; 2015 Feb; 108(3):678-86. PubMed ID: 25650934
[TBL] [Abstract][Full Text] [Related]
34. Peptide models provide evidence for significant structure in the denatured state of a rapidly folding protein: the villin headpiece subdomain.
Tang Y; Rigotti DJ; Fairman R; Raleigh DP
Biochemistry; 2004 Mar; 43(11):3264-72. PubMed ID: 15023077
[TBL] [Abstract][Full Text] [Related]
35. Native like structure in the unfolded state of the villin headpiece helical subdomain, an ultrafast folding protein.
Meng W; Shan B; Tang Y; Raleigh DP
Protein Sci; 2009 Aug; 18(8):1692-701. PubMed ID: 19598233
[TBL] [Abstract][Full Text] [Related]
36. Characterizing a partially folded intermediate of the villin headpiece domain under non-denaturing conditions: contribution of His41 to the pH-dependent stability of the N-terminal subdomain.
Grey MJ; Tang Y; Alexov E; McKnight CJ; Raleigh DP; Palmer AG
J Mol Biol; 2006 Feb; 355(5):1078-94. PubMed ID: 16332376
[TBL] [Abstract][Full Text] [Related]
37. Microsecond scale replica exchange molecular dynamic simulation of villin headpiece: an insight into the folding landscape.
Jani V; Sonavane UB; Joshi R
J Biomol Struct Dyn; 2011 Jun; 28(6):845-60. PubMed ID: 21469746
[TBL] [Abstract][Full Text] [Related]
38. A Hamiltonian replica exchange molecular dynamics (MD) method for the study of folding, based on the analysis of the stabilization determinants of proteins.
Meli M; Colombo G
Int J Mol Sci; 2013 Jun; 14(6):12157-69. PubMed ID: 23743827
[TBL] [Abstract][Full Text] [Related]
39. Cysteine scanning mutagenesis at 40 of 76 positions in villin headpiece maps the F-actin binding site and structural features of the domain.
Doering DS; Matsudaira P
Biochemistry; 1996 Oct; 35(39):12677-85. PubMed ID: 8841111
[TBL] [Abstract][Full Text] [Related]
40. Equilibrium kinetic network of the villin headpiece in implicit solvent.
Du W; Bolhuis PG
Biophys J; 2015 Jan; 108(2):368-78. PubMed ID: 25606685
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
