206 related articles for article (PubMed ID: 21788211)
1. RNAG: a new Gibbs sampler for predicting RNA secondary structure for unaligned sequences.
Wei D; Alpert LV; Lawrence CE
Bioinformatics; 2011 Sep; 27(18):2486-93. PubMed ID: 21788211
[TBL] [Abstract][Full Text] [Related]
2. RNA Sampler: a new sampling based algorithm for common RNA secondary structure prediction and structural alignment.
Xu X; Ji Y; Stormo GD
Bioinformatics; 2007 Aug; 23(15):1883-91. PubMed ID: 17537756
[TBL] [Abstract][Full Text] [Related]
3. Predicting a set of minimal free energy RNA secondary structures common to two sequences.
Mathews DH
Bioinformatics; 2005 May; 21(10):2246-53. PubMed ID: 15731207
[TBL] [Abstract][Full Text] [Related]
4. A graph theoretical approach for predicting common RNA secondary structure motifs including pseudoknots in unaligned sequences.
Ji Y; Xu X; Stormo GD
Bioinformatics; 2004 Jul; 20(10):1591-602. PubMed ID: 14962926
[TBL] [Abstract][Full Text] [Related]
5. Stochastic sampling of the RNA structural alignment space.
Harmanci AO; Sharma G; Mathews DH
Nucleic Acids Res; 2009 Jul; 37(12):4063-75. PubMed ID: 19429694
[TBL] [Abstract][Full Text] [Related]
6. PARTS: probabilistic alignment for RNA joinT secondary structure prediction.
Harmanci AO; Sharma G; Mathews DH
Nucleic Acids Res; 2008 Apr; 36(7):2406-17. PubMed ID: 18304945
[TBL] [Abstract][Full Text] [Related]
7. Predictions of RNA secondary structure by combining homologous sequence information.
Hamada M; Sato K; Kiryu H; Mituyama T; Asai K
Bioinformatics; 2009 Jun; 25(12):i330-8. PubMed ID: 19478007
[TBL] [Abstract][Full Text] [Related]
8. An iterated loop matching approach to the prediction of RNA secondary structures with pseudoknots.
Ruan J; Stormo GD; Zhang W
Bioinformatics; 2004 Jan; 20(1):58-66. PubMed ID: 14693809
[TBL] [Abstract][Full Text] [Related]
9. DAFS: simultaneous aligning and folding of RNA sequences via dual decomposition.
Sato K; Kato Y; Akutsu T; Asai K; Sakakibara Y
Bioinformatics; 2012 Dec; 28(24):3218-24. PubMed ID: 23060618
[TBL] [Abstract][Full Text] [Related]
10. Consensus shapes: an alternative to the Sankoff algorithm for RNA consensus structure prediction.
Reeder J; Giegerich R
Bioinformatics; 2005 Sep; 21(17):3516-23. PubMed ID: 16020472
[TBL] [Abstract][Full Text] [Related]
11. Murlet: a practical multiple alignment tool for structural RNA sequences.
Kiryu H; Tabei Y; Kin T; Asai K
Bioinformatics; 2007 Jul; 23(13):1588-98. PubMed ID: 17459961
[TBL] [Abstract][Full Text] [Related]
12. Robust prediction of consensus secondary structures using averaged base pairing probability matrices.
Kiryu H; Kin T; Asai K
Bioinformatics; 2007 Feb; 23(4):434-41. PubMed ID: 17182698
[TBL] [Abstract][Full Text] [Related]
13. Sequence-structure relations of biopolymers.
Barrett C; Huang FW; Reidys CM
Bioinformatics; 2017 Feb; 33(3):382-389. PubMed ID: 28171628
[TBL] [Abstract][Full Text] [Related]
14. Identification of consensus RNA secondary structures using suffix arrays.
Anwar M; Nguyen T; Turcotte M
BMC Bioinformatics; 2006 May; 7():244. PubMed ID: 16677380
[TBL] [Abstract][Full Text] [Related]
15. Bayesian sampling of evolutionarily conserved RNA secondary structures with pseudoknots.
Doose G; Metzler D
Bioinformatics; 2012 Sep; 28(17):2242-8. PubMed ID: 22796961
[TBL] [Abstract][Full Text] [Related]
16. TurboFold: iterative probabilistic estimation of secondary structures for multiple RNA sequences.
Harmanci AO; Sharma G; Mathews DH
BMC Bioinformatics; 2011 Apr; 12():108. PubMed ID: 21507242
[TBL] [Abstract][Full Text] [Related]
17. Accurate prediction of RNA nucleotide interactions with backbone k-tree model.
Ding L; Xue X; LaMarca S; Mohebbi M; Samad A; Malmberg RL; Cai L
Bioinformatics; 2015 Aug; 31(16):2660-7. PubMed ID: 25886978
[TBL] [Abstract][Full Text] [Related]
18. ConsAlifold: considering RNA structural alignments improves prediction accuracy of RNA consensus secondary structures.
Tagashira M; Asai K
Bioinformatics; 2022 Jan; 38(3):710-719. PubMed ID: 34694364
[TBL] [Abstract][Full Text] [Related]
19. StructureFold: genome-wide RNA secondary structure mapping and reconstruction in vivo.
Tang Y; Bouvier E; Kwok CK; Ding Y; Nekrutenko A; Bevilacqua PC; Assmann SM
Bioinformatics; 2015 Aug; 31(16):2668-75. PubMed ID: 25886980
[TBL] [Abstract][Full Text] [Related]
20. Multilign: an algorithm to predict secondary structures conserved in multiple RNA sequences.
Xu Z; Mathews DH
Bioinformatics; 2011 Mar; 27(5):626-32. PubMed ID: 21193521
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
